KEGG   Setaria viridis (green foxtail): 117862437
Entry
117862437         CDS       T07951                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03030  DNA replication
svs03410  Base excision repair
svs03420  Nucleotide excision repair
svs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117862437
   03410 Base excision repair
    117862437
   03420 Nucleotide excision repair
    117862437
   03430 Mismatch repair
    117862437
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svs03032]
    117862437
   03036 Chromosome and associated proteins [BR:svs03036]
    117862437
   03400 DNA repair and recombination proteins [BR:svs03400]
    117862437
DNA replication proteins [BR:svs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117862437
  DNA Replication Termination Factors
   ELG1-RFC complex
    117862437
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117862437
DNA repair and recombination proteins [BR:svs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117862437
  Check point factors
   HRAD17(Rad24)-RFC complex
    117862437
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_assoc_2 AAA_14 AAA_11 AAA_24 AAA_16 ResIII DEAD AAA_5 SLFN-g3_helicase PhoH nSTAND3 AAA_30 AAA_25 AAA_19 AAA_28 DNAX_ATPase_lid AAA_23 AAA_7 IstB_IS21 DUF3853 Cdc6_lid AAA_2 RNA_helicase Parvo_NS1 NB-ARC
Other DBs
NCBI-GeneID: 117862437
NCBI-ProteinID: XP_034601809
LinkDB
Position
7:complement(32262456..32266147)
AA seq 339 aa
MAPLVPMSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKMIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSS
RIMHICNEESLNLDAQALSTLSAISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIP
EDVVKSLLAACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIPDEQKARICK
KLGETDKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccgctcgtgccgatgtcgcagccgtgggtggagaaataccggccaaggcaggtc
aaggatgtggcgcaccaggaggaggtcgtccgggtgctcaccaacaccctccagaccgct
gatctgccacacatgctgttctacggcccgccgggcaccgggaagaccaccactgcactc
gccattgcctaccagctctacggtccagagctgtacaagtcaagagttttggagctcaat
gctagtgatgatcgtggaattaatgtggtgaggacgaaaatcaaggattttgctgctgtt
gctgttggtactgcacggaaagctggttatccctgcccaccttacaagatgattatactt
gatgaagctgattcgatgacagaagatgcccagaatgctttgaggcgtactatggagact
tactcaaaagtgaccagattcttttttatatgcaactatatcagcaggataatagaacca
cttgcatctagatgtgcaaagtttaggttcaagcctctttcagaagaagtgatgagcagt
cgtattatgcatatatgcaatgaagaaagtctcaatcttgatgctcaggcgctgtccaca
ctgagtgccatttctcaaggtgatcttcgtcgtgctataacctatcttcagagtgcagcc
cgcttattcggatcttctatctcttccagtgacctgatcagtgtttctggggttatccct
gaagatgttgtgaagtcactgcttgcagcctgcagatctggtgaatttgatgttgcaaac
aaggaagttagcaacatcatcgcagatggatatccagtctcccagctgatggcacagttt
ctagatgtaattgttagtgcggatgatattccagatgagcaaaaggcaaggatatgtaaa
aagcttggggaaactgataagtgcttggtcgatggggcagatgagtatctacagcttttg
gatgttgccagcgagacaattcgtgctcttttcgacatgccacaaacgctggtcttctaa

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