Setaria viridis (green foxtail): 117863266
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Entry
117863266 CDS
T07951
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117863266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117863266
04121 Ubiquitin system [BR:
svs04121
]
117863266
03036 Chromosome and associated proteins [BR:
svs03036
]
117863266
03400 DNA repair and recombination proteins [BR:
svs03400
]
117863266
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117863266
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117863266
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117863266
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117863266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
PTCB-BRCT
RTT107_BRCT_5
PHD_NSD
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117863266
NCBI-ProteinID:
XP_034602794
LinkDB
All DBs
Position
7:complement(23842586..23846566)
Genome browser
AA seq
622 aa
AA seq
DB search
MESLRRFLNPLVLNLQKMELELTCPVCLKLLCAPTTLPCHHTSCSKCATTPTSNGYSCAI
CKSAYHSQDLRPASHLEAIVSIHRSLSSTVSTMVQEQDAQVHIPVAKTASHGTPESGNRS
GVEKSDMKTFSPVASKLVYNQSTGPEFGNMDGIQTRDPAFENKAADAAVATTVLVQKGHS
GSQSSDGPGDLDCDSYDLEGELITSRSPPQTALKREANVMDDHTRELKKQKPNDQVQRQT
TGDWKCEFCHSSQVTECTGPLSHYLHGEPLEADQAWKSNVQHVHEKCIEWAPQAFFTGEI
ANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHKIKGCRWDEENFVMLCP
THSSKKLPCERSKSKKKAKLLQPSSDIDDLNSPSPMQMDEHWITSPVLTSERVICGSALN
GRERELLDQFEHQTGITVTNSWSSNVTHVIANTDERGACARTLKVLMAILAGKWVLNVNW
LRACIEARELIPEEPYEVRCDVHGSFDGPRTGRLRAMQQAPSLFAGLTFYFSGHFMPAYK
VSLEDLITAAGGSILEKTELSSTSLILYSVEPPQGSNLDALNEIIKKREAEAQESAAAVG
CRAIPHTWLLDSIASCTLQLTV
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggagagcctgaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctctgcgcgcccacaacgctaccgtgccac
cacacatcctgcagcaagtgtgccaccacgccgacttctaatggctatagctgcgccatt
tgcaaatcagcctatcattctcaagatttaaggccagcttctcaccttgaggcgatagtg
agcattcacaggagcctaagctccacagtcagcaccatggttcaagagcaggatgctcaa
gttcacattcctgttgcaaagacagcgtctcatggaacaccagaatcggggaacagaagt
ggggtagagaaatctgacatgaaaactttcagcccagttgcttcgaagttagtatataac
caatcaaccggccctgaatttgggaacatggatggtattcaaacaagagatcctgcattt
gagaacaaagctgctgatgcagctgttgcaacaactgtccttgtacaaaaggggcattct
gggtcacaatcttctgatggtcctggggatttggactgtgacagctatgatcttgaaggg
gaactgataacaagcagatcacctcctcaaactgcactgaaaagagaggcaaatgtaatg
gatgaccataccagagaattgaagaagcaaaaaccaaatgatcaggttcaaagacaaaca
accggtgattggaaatgtgaattttgtcattcttcccaagtcactgagtgtactggacct
ttgtcacattatctacatggggagccattagaggctgaccaagcttggaaatcaaatgtt
cagcatgtccatgagaaatgcattgaatgggctccccaagcattctttactggtgagatc
gcgaacaacttggagcctgagttggcccgtgcttctaagatcaagtgcagtgtttgtggc
ttgaaaggtgcagcacttggttgccttgttaagagctgccgcaagagctttcatgtccca
tgtgcccacaagatcaaaggctgcagatgggatgaagaaaactttgttatgctgtgtcct
actcattcatcaaaaaagttgccttgtgagagatcaaagtcaaaaaagaaggccaagcta
ctacaaccatcttctgacattgatgatctgaattcaccttctccaatgcaaatggatgaa
cattggatcacctcacctgttctgactagtgagcgggtgatatgtggatccgccctcaat
ggccgtgagagggaactcttggatcaatttgagcatcaaactgggattacagtaactaac
agttggagctcgaatgtgactcatgtgattgctaatacagatgaacgtggggcatgtgct
aggacactcaaggttctaatggctattttagcggggaaatgggttctcaatgtaaattgg
ttgagagcctgtattgaggctagagaactaatcccagaagagccctatgaagtcaggtgt
gatgttcatggctcttttgatggccctcgcacaggaagacttcgagcgatgcaacaggca
ccaagtctgtttgccgggttaaccttctatttcagtggccatttcatgccagcatacaag
gttagccttgaagatttgattactgcagcaggggggtcgattttggagaagaccgagctt
tctagtacatccttaattctctacagtgtagagccgccacaaggaagcaatctagacgcc
cttaatgagatcatcaagaagagagaagctgaggctcaagaatcggcagcggcagttggc
tgcagagctattcctcacacatggcttctggattctattgcatcttgcaccctgcagttg
acggtgtga
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