Setaria viridis (green foxtail): 117863302
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Entry
117863302 CDS
T07951
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117863302
03015 mRNA surveillance pathway
117863302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117863302
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117863302
mRNA cycle factors
P-body specific factors
117863302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
PsiA
Motif
Other DBs
NCBI-GeneID:
117863302
NCBI-ProteinID:
XP_034602853
LinkDB
All DBs
Position
1:complement(31617637..31628687)
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AA seq
1194 aa
AA seq
DB search
MDNAQNENRTDTKQDDEVRQSKQDDEEARLEEYKKIIDQKTSLRRSNLNPERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSLLHQRYKDFSPCLIQGLLKIFFPGKSGDDLDADKNSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSAEHLKDREATQTNLSLLSTFARQGRFLVGLQSHGQEAYDEFFKD
LNVTADQKKFFKKALNSYYDAVAELLQSEHASLRLMEAENAKVLSAKGELSDENTASYEK
LRKSFDQLLRGVSSLAEALDMQPPVMPDDGNTTRVTTGTDVSPSSGKESSALEPIWDDDD
TKAFYESLPDLRAFVPAVLLGEVEPKSNEQHAKGREQSSESTSEQEIELHDNAQTSANEH
QLEVKVDDGAKDNEDKDKERGKDGEKEKFKEKDLDKKNEREKEKVRGLDGASLDNLLQRL
PGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDV
PSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFS
HHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCK
PPERSARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPWAECQQYLLKCFLKVHK
GKYSQVHLIALLTASLSRYHDDFAVAVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGEL
YSYKHIDSSVVFETLYLIIVFGYGTPEQDVLDPPEDCFRIRLIITLLQTCGHYFSKGSSK
RKLDKFLLHFQRYIMSKGPLPLDIEFDIQDLFAEIRPNMARYSSIEELNAALVELEENER
SAPVEKAENERHSDNESQKRQPRDAAPSVNGQSTTNGVEENGKDHEVADSESYSGSGSID
GREDEEDILSEDKSNDGSDNEGDDEDDGIPVGSDEDENVGVRQKVVQVDLKEQEDFDREL
KALLQESLESRKSEARSRLPLNMMVPMNVLEGSKDQRATESESGEETVDEEGGNVGSSKV
RVKVLMKKGHKQQTKQMLIPADSSLVLSTKQQEAAELEEKQSIKRRILEYNEREEEELNG
GVSQMGNWGQGASTTSSIRSGGRGTWDGSTRGGGRQRHHIAGSGGFYHSYGRRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggataatgctcagaatgagaaccgaactgacaccaagcaagatgatgaggtgcgccaa
agcaaacaggatgatgaggaggcccgccttgaagaatataaaaaaataattgatcagaag
acttccctccgccgcagcaacctaaaccctgaaaggcctgatgcaaactacctgagaact
ctggactccagtatcaagcgaaatacaacagttataaaaaagctgaagacaataaatgat
gaacagaaggatggcctaatggatgagctgaaaagtgtgaatttgagcaaatttgtcagc
gaagcagtttcttatatttgtgaggccaaacttcgctctgctgatatacaagctgcagtt
caggtttgctcgcttcttcatcaaagatacaaggacttctctccttgtcttatacaaggt
ctactgaagatcttctttcctggaaaatctggagatgatttggatgcagacaaaaattca
agagctatgaagaagagaagcacattgaaacttctgattgaactgtattttgttggaatt
gttgaagatgctagcatatttgtaaacattataaaagatcttacatcagcggaacatttg
aaggaccgtgaagcaactcagacaaatttgtctcttctctccacttttgctcgtcaaggg
aggtttcttgtagggcttcagtctcacggtcaagaagcttatgatgagttctttaaggac
ctaaatgttactgctgatcagaagaagttctttaagaaagccttgaactcttactatgat
gctgtagctgaactactacaatcagaacatgcgtctcttcgtctaatggaggcggagaat
gcaaaagttttaagtgccaaaggtgaactaagcgatgagaacacagcctcgtatgagaaa
ctcaggaagtcttttgatcagttgctgcgtggtgtatcctcgctggccgaagctcttgac
atgcagcctccagtgatgccagatgatggaaatacaacaagggttactacaggaactgat
gtctcaccctcttctggaaaagaatcatctgcactggaacctatttgggatgatgatgat
accaaagctttttatgaatctttacctgatctcagagcatttgtgcccgctgtattattg
ggagaggttgaaccaaagtcaaatgagcaacacgctaagggccgtgagcaatctagtgaa
tccacttcagaacaagagattgaactacacgacaatgctcaaacttctgccaatgaacat
caactggaagttaaagtagatgatggagccaaagataatgaagacaaagataaagagagg
ggaaaagatggagaaaaggaaaaatttaaggagaaggatctggataagaaaaatgaaaga
gagaaagagaaagtaagaggcttggatggtgcaagtttggataacctcttgcagaggttg
cctggatgtgttagccgtgatcttattgatcaattgacggttgagttttgctacctaaat
tctaaagcaaatcgaaagaaacttgtgcgtgccttattcaatgttaataggacttcactg
gagctgttgccttactattctcgtttggttgcaacactatcgacttgtatgaaagatgtt
ccaagtatgctactgtctatgcttgaagaagagttcaactttttaataaataagaaggat
caaatcaacattgaaacaaaaataaaaaacattaggtttattggggagttgtgcaagttc
aagatggctcctccagctcttgtttttagctgtttgaaggcttgcctagatgatttcagt
catcataacatcgatgtagcctgcaaccttctcgagacatgtgggcgttttttgtatcgc
tctcctgaaactacaattcgcatggctaacatgctggagatactgatgagattgaaaaat
gtcaagaatttggatccacgccacagtacacttgtagaaaacgcctactacctctgtaaa
ccaccggaaagatctgcgcgaatctcaaaagttcggccacctctgcatcaatacataaga
aagttgcttttctcagatcttgataaatcaagtgttgaacatgttttgcgccaactacgc
aagttgccttgggcagagtgtcaacaataccttttaaagtgctttctaaaggttcacaaa
ggaaagtacagccaagttcatctgattgctcttctcactgctagcctcagccgctatcat
gatgattttgctgtcgcggtggtagatgaggttttagaagagataagggttggactggag
ttgaatgactacgggatgcaacaaaggcggcttgctcacatgcgattccttggagagcta
tacagctacaagcatatagattcatcagttgtatttgagacactgtaccttatcattgta
tttggttatggaactcctgaacaagatgtgttggatccaccggaagactgcttcaggatc
aggttgatcattacacttttacagacctgtggtcactacttcagtaagggatcttcaaaa
aggaagctcgacaaattcttgctacactttcaaagatacattatgagtaaaggcccctta
ccgcttgacatagagtttgacattcaggatttatttgctgagatccgaccaaacatggct
aggtattcatcaattgaagaactgaatgctgcattagttgagctcgaagaaaatgaacgt
tcagccccagtagaaaaggctgaaaatgaaagacactcggacaatgaatctcagaaaaga
cagccacgagatgctgctccatctgtgaatggtcaaagcacaacaaatggagttgaggaa
aatggcaaggatcatgaagtagcagacagtgagagttattcaggtagtggcagcattgat
gggcgggaagatgaggaggatatattatcggaggataaatcaaatgatggctctgataat
gaaggtgatgatgaagacgatggcattcctgttggttctgatgaagatgaaaatgttggg
gttagacagaaagtcgtgcaggttgatctgaaggagcaagaagattttgatcgagagctg
aaagcccttcttcaggagagcctggaatcacgtaaatcagaggctcgttcaaggctccca
ttgaacatgatggtaccaatgaatgtcctcgagggttcaaaagaccaaagggccacagaa
tctgagagtggggaagaaacagtggatgaagagggtggcaatgttggtagcagcaaggtg
cgtgttaaggtgctgatgaagaaaggacacaaacaacagacaaagcaaatgttgattcct
gctgacagctcactcgtgctaagcacaaagcagcaagaggctgctgagcttgaggagaag
cagagtatcaagcggaggatccttgaatacaatgaaagggaggaagaagagctgaatgga
ggagtgtcacaaatgggcaattggggtcaaggagctagcactactagcagtatcagatca
ggtggacggggcacctgggatggttccacgcggggaggtggtcggcaacggcaccacatc
gcgggttcaggtggtttctatcacagttatggcaggaggagataa
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integrated database retrieval system
