Setaria viridis (green foxtail): 117863317
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Entry
117863317 CDS
T07951
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117863317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117863317
Spliceosome [BR:
svs03041
]
Complex A
Other components
Complex A specific factors
117863317
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
eIF3g
RRM_5
PHD_4
KH_PNO1_2nd
RRM_10
DUF6319
RRM_Nup35
RRM_7
HMA_AllF_N
Tuftelin_like
DUF8363
RRM_MUD2_C
Motif
Other DBs
NCBI-GeneID:
117863317
NCBI-ProteinID:
XP_034602866
LinkDB
All DBs
Position
7:16674254..16677385
Genome browser
AA seq
730 aa
AA seq
DB search
MASAETLARSPSREPSSDPPRAASSEPPRDPSSEPHGNGDGSGAGAGDSSSRRRRRSRWE
QSSDDPAANNSGGEGGAGGRKRKTRWAEEEPRPAIALPDFMKDFAAEMDPEVHALNARLL
EISRLLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQLIRR
NPAFKPPSDYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKG
SVKEGKLLQKRDLKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLTPVDEVLNEHKRQQ
LRELAALNGTIRDDEFCRTCGEPGHRQYACPNKMNTFKSDVQCKICGDGGHPTIDCPVKG
TSGKKMDDEYQNFLAELGGGSAPESMTKSGGPMLALTGSGGSGGASAGSGSNPPWSAGGG
AAAIGANGIKKDYDETNLYIGYLPPTMDDAGLISLFSQFGDIVMAKVIKDRNTGHSKGYG
FVKYSDVSQANAAIAAMNGHHFEGRVIAVRVAGKPPQPAPAVSAPPSYPPTDPASGGYSS
QSYMGAPPPPPPGSYTPVPWGHPPPYASYPPPPPGSSVYNPAPPAPGQTAPPPYGVQYPP
PPPSPAAPIPPPGTAASSDGAQNYPPGVTPPSSGAPTHPAPAPVYASSGAPNAPPMYPPP
PYSYSTYYPTYQPPPPPPPASVDPSQSIATAPWATHNAVPPPPPPLSSTTDQPASYGADA
EYDKFMSEMK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccgaaaccctagcccgctccccctcgcgcgagccctcctccgaccctccc
cgcgccgcgtcgtcggagcccccgcgcgacccgtcctccgagccccacggcaacggcgat
ggctccggcgcgggcgccggggactcctcctcccgccgccgccgccgcagccgctgggag
cagtccagcgacgaccccgccgccaacaactccggcggcgagggcggggccggggggcgg
aagcgcaagacgcgctgggccgaggaggagccgcgcccggccatcgcgctcccggacttc
atgaaggacttcgccgccgagatggaccccgaggtgcacgccctcaacgcgcgcctcctc
gagatctcgcgcctgctgcagtcgggcctcccgctcgacgaccgcccggagggcgcgcgc
tcgccgtctcccgagcccgtctacgacaacctcggcatccgcatcaacacccgcgagtac
cgcgcccgggagcgcctcaaccgcgagaggcaggagatcatctcccagcttatccgccgc
aaccccgccttcaagcccccctccgactaccgcccgcccaagcttcagaagaagctctac
atccccatgaaggagtacccagggtacaatttcatcgggcttatcatcggcccgcgcggc
aacacgcagaagcggatggagaaggagaccggtgccaagattgtcatcagggggaagggg
agcgtcaaggaagggaagctgttgcagaagagggatctcaagccggatcccagcgagaat
gaggacctccatgtgcttgttgaggcagagactcaggaggcactggatgcggctgctggg
atggtggagaagctgctaaccccggtggatgaggtgctgaacgagcacaagaggcagcag
cttcgggagcttgccgcgctcaatgggacaattagggatgatgagttctgtaggacatgt
ggggagcctggtcaccggcagtatgcttgccccaataagatgaacacgtttaagagtgat
gtgcagtgcaagatttgtggtgatggtgggcacccgacaattgattgtccggtcaagggc
acgtctgggaagaagatggatgatgaataccagaacttcctggctgagcttggtggtggg
agtgcacctgagtccatgacaaaatctggtggtcccatgttggctcttacaggaagcggt
ggcagtggtggcgcttctgctggtagtgggagtaacccgccttggtctgctggtggtggt
gcggctgccattggggccaatggtatcaagaaagactacgacgagacaaatctgtatatt
ggttacttgccacctacaatggatgatgcaggattgatcagtctgttttcacaatttggg
gatattgtcatggctaaggtgatcaaggatcgaaacactgggcatagcaaaggatatgga
tttgtgaagtattcagatgtctcacaggctaatgcagcgattgctgcaatgaatggtcac
cattttgaaggcagagttattgccgttagagttgccggcaagcctccacagccggcacct
gcagtgtcagcaccaccgtcatatcctcctacagatcctgcttctggtggctattcttcc
caatcctacatgggggcaccacctcctcctccaccagggagttacactccagttccatgg
gggcacccaccaccatatgcttcgtatcctccgccgccaccaggctctagcgtctacaat
ccggcaccccctgcaccaggtcagacggccccacctccatatggtgtgcagtatcctcct
ccaccaccatccccagcagctccgatccctccaccaggcactgctgcatcaagtgatgga
gctcagaattatccccctggtgtaacaccaccgagttctggtgcacccactcaccctgcc
ccagctccagtatatgcatcctccggcgcaccaaatgcaccaccaatgtaccctccacca
ccttatagttactccacatactatcctacatatcagccaccgcctcctccgccaccagct
agtgtcgatccctctcagagtattgcaacggcaccttgggccacccacaatgcagtgcca
ccaccgccaccacctttgtcctccaccaccgaccagccagcttcctatggtgctgatgcg
gagtatgataagtttatgtcagaaatgaagtga
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