Setaria viridis (green foxtail): 117863483
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Entry
117863483 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117863483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117863483
03036 Chromosome and associated proteins [BR:
svs03036
]
117863483
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117863483
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117863483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
117863483
NCBI-ProteinID:
XP_034603090
LinkDB
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Position
7:35382303..35389111
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AA seq
920 aa
AA seq
DB search
MFGSTNPFGQSSTSPFGQNSFGTQQGFGQATPAANNPFAPKPFGSPTTAFGAQTGGSPFG
TASTGAFGQQQSTPTFGTTSTGAFGQQQSTPTFGTPSSSPFGSTPAFGASPAPAFGSSSS
TFGSGSLFGQKQSFGGFGSSPSQSSPFGSTFQQTQPTFGSSTFGASTTPAFGTTTTPAFG
ATAPAFGTSTPAFGTATTPAFGSTSTSTSLFGASSTPAFGSSTPGFGTSGSTAFGVGGTA
PGFGSSSTPSFGTSTNAFSFGSSPSFAQTAVSSGSSPFGTTSPFGAQTPAFGSQTAAAAF
GQAQFGNQAGGTRIKPYAQTPDVDGATSATQPAAKLDSISAMPEYKDKSHEELRWEDYQR
GDKGGPNPSGTPAAAPIFPSLSTQQNAFAPTSNVFNQSTPSAIPTNNPFAPKPVSTSASP
FNSFNSTVASSSPFASSTSTTMFGQTGVSPFQASSSPSLFANTTPFASSSLFGTSTTNNP
NPFGTVSSLANTQSAPLFQSAPTFAQPSSTPAFSSGNLFSTPPGSLFGGGPSLFSTPTFQ
TSAPVQTPNTFSFQPPTQPASTGGFPGFSNTANQALIGQQSPSQSNMVMQPAPISNPFGT
LPAMPQMSIGNGGSSPSVQYGISSLPVAEKPLPTRTLSMAVPRHLSQRRIKLLPRKYNPI
SDGKVPFFADDEESPATPKADAFFIPRENPRNLIIRPIEQWPSRSAINRQSVPKDSTDLD
KYEDTSTESGRDKTVKSPSSSPLVENGQQHEPSHHGNGKGTSVERLLPKLPQEDYFTEPS
LEELAAKERGEPGYCSRVKDFVVGRHGYGSIKFLGETDVRGLDLESIVEFNNREVIVYKD
DSKKPPVGEGLNKAAEVTLLNIKCMNKKTGDQYREGPRVERYRDMLMMKAEEQGAEFVSF
DAAKGEWKFRVKHFSTYGLW
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccatttgggcagtcatccaccagcccatttggacagaactca
ttcggaacccagcagggattcggccaggctacacctgctgctaacaacccctttgcgcca
aaaccgtttggcagcccaaccacagctttcggggcacagactggaggctcgccttttggc
actgcatccactggtgcctttggccagcagcagtccactcccacatttggcactacatcc
actggtgcctttggtcagcagcaatccactcccacgtttggcaccccgtcctcctctcca
ttcgggagcactccggcgttcggtgcatcgcctgcccctgcctttggctcctcatcctct
acctttggctctggatctttattcggacaaaagcaaagttttgggggttttggatcatca
cctagccagtcaagtccttttggtagcacgttccagcaaacacaaccgacatttggcagc
agcacttttggcgcatcaactacgccggcattcggtaccacaactacgccggcatttggt
gcaaccgcgccagcctttggaacgagtacaccggcctttggcaccgcaactaccccagca
tttggttcgacatcaacatcaacatctttatttggtgcttctagcaccccggcgtttggt
tcatctactcctggttttggaacttcagggagcacagcatttggtgtgggtggtactgct
ccaggttttggatcttcgagcacaccttcattcggcacatcaaccaatgcattcagtttt
ggttcttcaccatcttttgcacaaacagcagtttcctctggtagttctccctttggaaca
acatcaccttttggtgcgcagactccagcatttggctcacagacagcagcagcagctttt
gggcaagcacaatttggtaatcaagctggaggaaccagaataaaaccttatgctcaaaca
ccagatgttgacggtgctaccagtgctactcaacctgctgcaaaacttgattccatatct
gcgatgcctgaatacaaagacaagagtcatgaagaattgaggtgggaagactaccagcgt
ggagacaagggtggaccaaacccttctggaactccagcagcggctcctatctttccatca
ttaagtacacaacagaatgcttttgctccaacaagcaatgtatttaaccagtctacccca
agcgcaattccaacaaacaatccatttgctcctaagcctgtttcaactagtgcttcacca
ttcaactcgtttaacagtacagttgcaagttcgagcccattcgcatcgtccactagtacc
acaatgttcggacagacaggtgtttccccatttcaagcaagtagctcaccatctttgttt
gcaaataccactccttttgcttcatcatcgttgtttggcacatcaactacgaataatcca
aatccattcggcactgtctcgtcattggctaacactcaatcggccccactatttcaatct
gccccaacatttgcacaaccatcaagtacaccagctttctcctctggaaacctatttagc
acaccacctggcagtctgtttggcggcggaccttcacttttttcaacgccaacatttcag
acatctgcacctgttcaaacgccaaacacattctccttccaacctccaactcaaccagct
tctacaggtggtttccctggtttttccaacactgctaatcaggccctcattggacaacaa
tctcctagccagtccaatatggtcatgcagcctgctcctatttcaaatccatttgggaca
cttccagcaatgcctcagatgtccattgggaatggcggatcttctccttcagttcaatat
ggaatatcaagtctgccggttgctgagaagcctcttccgactagaacattgtccatggcg
gttcccaggcatttgtcacagagaaggataaaattgctgccaagaaaatataatccaata
tcagatggcaaggttccattctttgctgacgatgaggaatctccagcaacaccaaaagcg
gatgcttttttcatccctagagagaacccgaggaatctgataatccgtccaattgagcag
tggccttcgcggagtgcaattaacaggcaatcggttccaaaggattcaactgatttggac
aaatatgaagatacgtccactgaaagtgggcgtgataagactgtcaagtcaccaagcagc
agtcctctggtggaaaatggccagcagcatgaacccagtcatcatgggaatgggaagggt
acttcagttgagaggctgttgcctaagctcccgcaggaagattacttcacggagcctagt
ctggaggagcttgctgccaaagaacgtggtgagccaggctactgcagtcgggtgaaagac
tttgttgtggggcgccatggctatggcagcatcaagttcctgggggagacggacgtgagg
ggcctggatctggagtcaatcgtggagttcaacaaccgggaggtgatcgtgtacaaggac
gacagcaagaagcccccggtgggtgagggactgaacaaggctgcggaggtgactcttctg
aacatcaagtgcatgaacaagaagaccggggatcagtaccgagagggcccgcgggtggag
aggtacagggacatgctgatgatgaaggcggaggagcagggcgcggagttcgtgtccttt
gacgcagccaagggagagtggaagttcagggtgaagcacttcagcacctacgggctctgg
tga
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