Setaria viridis (green foxtail): 117863783
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Entry
117863783 CDS
T07951
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117863783
09123 Folding, sorting and degradation
03018 RNA degradation
117863783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117863783
03041 Spliceosome [BR:
svs03041
]
117863783
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117863783
mRNA degradation factors
5'-3' decay
Lsm complex
117863783
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117863783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
117863783
NCBI-ProteinID:
XP_034603519
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Position
7:complement(30187923..30190191)
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AA seq
98 aa
AA seq
DB search
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcgcaaggagactgcgctagaccttgcgaagttcgtcgacaagggcgtccag
gtgaagctcaccggcggccggcaagtgacagggactttaaagggatacgaccagctcctc
aacttagtgctggatgaagcagttgagtccgaaagagagcaagatgatccattgaagcta
tccgggaaaaccagacagcttggtctcattgtgtgcaggggcacggcggtcatgctggtc
tcaccaactgatggaactgatgagatcgccaaccctttcctcgccgatggggcataa
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