Setaria viridis (green foxtail): 117863853
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Entry
117863853 CDS
T07951
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
svs01009
]
117863853
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117863853
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
117863853
Protein phosphatases and associated proteins [BR:
svs01009
]
HAD phosphatases
Fcp/Scp phosphatases
117863853
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
117863853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Glyco_transf_92
Motif
Other DBs
NCBI-GeneID:
117863853
NCBI-ProteinID:
XP_034603611
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All DBs
Position
1:31962917..31974597
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AA seq
937 aa
AA seq
DB search
MFKSMVYYGNTSIGEVEVWPKGEASAGLAVAAWAREIRVDRLSPPSERCPPLAVMHTVAV
GARCLVMESRPPAATDVAPLPLVAMHAACLRDNKTAVVPLGDEELHLVAMTSRRNLANHA
CFWGYKLPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTSRSFEDRIDALQRKQSNETDP
QRRNGMLSEIKRYQDDKSILKQYIEGDQVYDDGKMYKAQPEVVPPLSDNQQPMTRPVIRL
QDKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWR
LLDPDSRLINSVQLNDRMVCVKSGLKKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSR
VHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVHYEDEIN
DISTAPDVGNYLIREDENVAAVNGNRDALPFDGMADAEVERRMKEASGNAQAFHPTVASF
VMPVAPPQNFISSSVAPIAPPLGMMPPPFNQPVVQPGFSDPLQGSPAREEGEVPESELDP
DTRRRLLILQHGQDTRDATPPLPAIPPVQVPVPPVQPHGNWFPAEDGMNPSNLNIGPAGF
TVESDSLLYEKKQPPHPSFFHGGDNPMSSDRFSYQNQRFPSQLPHADDHHILQNHGPPKY
RSFSGEELSGRHVPTNQRNNQLESGRHFAQYTGTPAGILEGIALKCGSKVEYRSTLCDTA
ELQFSIEVWIVGEKIGEGIGRTRREAQRQAAEMSLRNLANKYLSSDPNKMTDLKENGFSS
NRNFFGYSGNNRDDILPVPSTSEESRFMKMEENNSRKTGGSVAALKELCTAEGYNLVFQA
RPYAPDGSVGKESYAQVEVGGQILGKGVASTWEEAKLQAADEALGTLRSMLGQLGHKRSG
SPRSVAPNFNKRFKPDFPRTMQRVPYGTYSRIEGHVP
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagtcgatggtttattacgggaacacctcgatcggagaggtggaggtgtggccc
aagggcgaggcgagcgccggcctggccgtggcggcgtgggcgcgagaaatccgcgtcgac
cgcctgtccccgcccagcgagcggtgcccgccgctcgccgtcatgcacaccgtggccgtc
ggcgcccgatgcctcgtcatggagtccaggccgcccgccgccaccgacgtggcgccactg
ccgctcgtcgccatgcacgccgcttgcctcagggacaacaagactgcagttgttcctcta
ggagatgaagaattgcatttagttgcgatgacgtccagaagaaacttggcaaatcatgca
tgtttctggggctataaattgccatttggtttgtacaattcttgcttgaccatgttaaat
cttcggtgcctgggtattgtgtttgacctggatgagacattgattgtcgccaatacatca
cggtcttttgaggacagaattgatgcgcttcaaagaaagcagagtaatgagactgatcca
cagcgtagaaatggtatgttatcagagatcaagaggtaccaggatgataagtccatccta
aagcaatatatagaaggtgatcaggtatatgatgatggaaaaatgtataaagcacaacct
gaggttgttccaccattgtctgataaccagcaaccaatgacacgtccagttataagatta
caagataaaaacattatcttgacaagaataaaccctctgataagggatacaagcgttctt
gtccgtttaaggccagcctgggaggatcttcgcagttatttaattgcgagaggtcgcaag
cgttttgaggtctatgtgtgtacgatggcggagagagattatgctttagaaatgtggcga
ttgcttgatccagattcaagattgattaactctgttcaacttaatgatcgaatggtgtgt
gtaaaatctggtttgaaaaagtcactgttaaatgttttccatgatggttcttgccatcct
ggaatggcattagtaattgatgatcgtctaaaagtttgggatgagaaagatcaatctaga
gttcatgtggttcctgcattcactccatactatgctcctcaagcagaggcaaactgctct
atcccagttctgtgtgtcgccagaaatgttgcatgcaatgttaggggtggtttcttcaaa
gactttgatgaaggcctcttgccgaggattagcaatgttcattatgaggatgagataaat
gatatctcaacagctccggatgtcggcaattatttgataagagaggatgagaatgttgca
gcagtaaatggaaatagagatgcattgccttttgatggtatggcagatgctgaggttgag
aggagaatgaaggaagcatcaggcaatgctcaagcattccatccaacagtggcaagcttt
gtcatgccagtagcccctccccagaattttatttcgtcttcagtcgcaccaatagcccca
ccccttggcatgatgccacctccattcaaccaaccagttgttcaaccaggtttttcagat
ccactgcaaggctctccagctagagaagagggtgaagttcctgaatctgagttggatcca
gacacaaggaggaggcttctcatattacagcatggtcaagacacaagagatgctacacct
ccactcccagcaataccaccagtgcaagtcccagttccaccagtgcaacctcatgggaac
tggtttcccgcagaagatggtatgaatccaagtaatctgaatataggtccagcaggtttc
actgtagaatctgattctctgctctatgagaaaaagcaaccacctcatccttcattcttt
catggtggggacaatcctatgtcctctgatagatttagctatcagaatcagaggtttccc
tctcagctaccgcatgctgatgatcaccacatacttcagaaccatggacctccaaaatac
agatccttttctggtgaggagctatcaggtcggcatgttcccacaaaccagagaaacaac
cagttagaatcaggaagacactttgcacaatatacagggacccctgctggcatattagag
gggattgcactgaagtgtggatctaaggtggagtacaggtcaacattatgtgatactgca
gagctacagttctctattgaggtttggattgttggggaaaagataggtgaaggaattggc
aggacaaggagagaagcacaacgtcaagctgcagaaatgtctttaagaaacttggctaat
aaatacttgtcatctgatccaaataagatgactgatctgaaagaaaatggtttcagtagc
aaccgaaacttttttggatactctggaaataatagggatgatattttgccagttccaagt
acttccgaggaatctcgctttatgaaaatggaggagaataactccagaaaaacaggaggt
tctgttgctgctctcaaggagctttgcacggctgagggatataacttagtttttcaagct
cgtccatatgctccagatggctcagttgggaaagaatcttatgctcaggtagaagttggt
ggacaaattctaggcaaaggagttgcgtcaacatgggaggaggccaaactccaggctgct
gatgaggctcttggaactttaagatccatgctaggtcaacttggtcataaacggtcaggt
tctccaaggtcggtggcaccaaattttaacaagcgcttcaagcctgattttccaaggaca
atgcagagggttccttatggaacatattccaggatagaaggccatgttccttga
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