Setaria viridis (green foxtail): 117864025
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Entry
117864025 CDS
T07951
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117864025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117864025
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
RNases
117864025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-GeneID:
117864025
NCBI-ProteinID:
XP_034603882
LinkDB
All DBs
Position
7:complement(31969743..31975571)
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AA seq
606 aa
AA seq
DB search
MLYLQKGPQGRSPSPTVAQKKANSKVRARLLFFGGLPCKFSERQSPRTSTASPPAATMST
PSGNGGSSSAYFDVYGRNAKPDVVFKEAALNSTLNLQDVQGLVTWVIGDGMLPSWVFVKN
KPLIPKVILLYVPGLDAALYMSQTRLLSSLKELCGNPKPVLASSCIPDERHTIDALLTCR
VKRKRDVKTSNQSAKPDGEGKISSLDDLGDIPFPVTYYTLSEKDLEDNGYSFNLSGFVPT
VSAPSGSSPHKILALDCEMCVTGAGFELTRVTLVDIKGTVVLDKLVKPANQIIDYNTRFS
GITAEMLADVSTTLQEIQEEFVGLVHKETILVGHSLENDLTALRISHGLIIDTAVLYKYN
RGARCKIALRVLTKKFLGREIQNTGSGHDSVEDARAALELAILKIKNGPDFGSQPSLSRR
KLTSILHESGKKCSLIDDVSVLERYSDTSCNSIAAFSDDDALSRSMKEVKNDKVSFVWTQ
FSGLISYFRRRVQDPEKLKSCVAEAIALKTCDAKTASKKARRQICPELKEVLCGLDKKIR
ELYGALPDNAMLIVCTGHGDTPLVQRLRKMLHHEENTIESRENIVQALGDLQAQAEVALC
FCCVKH
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgctctatttacaaaagggcccccaaggtcgcagcccaagcccaacagtagcccagaag
aaggcgaattcgaaggtcagagcgagactcttgttcttcggagggcttccctgcaagttt
tcagagcggcaaagccctagaacctccaccgcctcgccgccggcggctaccatgtcgacc
ccctccgggaacggcggcagctcctccgcgtacttcgacgtctacggccgcaacgccaag
cctgatgtcgtttttaaggaggctgctttaaactctacgctaaatctgcaggatgttcag
ggtctagtcacttgggttattggtgatggcatgcttccttcttgggtgtttgttaagaac
aagcctcttatacctaaagtcatcctgctatatgttcctggcctagatgcagctttatat
atgtcacagacgcgacttctttcttctctgaaagaattatgtggcaatccaaaacctgta
ctagcttctagctgtataccggatgagaggcataccattgatgcactcctaacctgcaga
gtaaagagaaagcgtgatgtaaaaacatcaaatcaatcagctaaaccggacggagaagga
aaaatatcaagtctggatgatcttggggacataccgtttcctgttacatattacacactt
tcagagaaagacttagaagacaatggctattctttcaatttatcaggttttgtccctact
gtttcagctccttcaggttcttctccacataaaattcttgcacttgactgtgaaatgtgc
gtgacaggagctggatttgaacttacaagggtgacattagttgatattaaagggacggta
gtgctagacaaactagttaagcctgccaatcaaatcatcgattacaatacaaggttcagt
ggaataactgctgagatgttggctgacgtgtccacaaccctacaggagattcaggaagaa
tttgttggacttgtccataaagaaaccattcttgttgggcattctttggaaaatgacctt
acggcattacggatatcccatggtttaatcattgatacagctgttttgtacaagtataat
cgaggtgctcgctgcaagattgctttgcgtgtcttgacaaaaaaatttctgggccgggag
atccagaacactggatctgggcatgatagtgtggaagatgcaagagctgctctagaactt
gctatattgaaaataaaaaatggtcctgattttggttcccaaccatcgttgtcaaggcgg
aagttgacatccatactgcatgagagtggtaaaaaatgctcccttattgatgacgtgtct
gttcttgagagatattcagatacttcttgcaattcaattgctgctttttcggatgatgat
gcactctccagatcaatgaaggaggtgaagaatgacaaagtcagctttgtttggactcag
ttctcaggattgatctcctacttccgcagaagagttcaagatccggaaaagttgaaatca
tgtgtcgcagaggccattgcattaaaaacatgcgatgcgaaaactgcttcaaaaaaagca
agacgtcaaatttgtcctgagttaaaggaagttttgtgtggattggataaaaagataagg
gaattatatggtgccctacctgataatgctatgcttattgtatgcactggccatggtgat
acacctctagtacaaagattgcgtaaaatgcttcaccatgaagaaaacacaatagaaagc
cgagaaaatattgttcaagctttgggagatttacaagcccaagcagaagttgctctatgc
ttctgctgtgttaaacattga
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