Setaria viridis (green foxtail): 117864345
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Entry
117864345 CDS
T07951
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117864345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117864345
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117864345
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117864345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117864345
NCBI-ProteinID:
XP_034604302
LinkDB
All DBs
Position
7:complement(21493847..21499087)
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AA seq
697 aa
AA seq
DB search
MQGCLRRLLRAPPPRALLSRALSSSPPPGGGSGVAVKQVTRGNLAEALEELRGRVREATF
VGLDLEMSGVTSAPWRDTFELDRDDVRYLKLRDSAERFAALQLGVCPFRWDPAKSAFVAY
PHNFFIFPRKELSDCSSHEFLCQTTSIDFLAKYQFDFNTCFREGISYLSRAQEEEALQKL
NFFHQDRPFSSSATSEGDGDMPLKRTADILFTERMKMNFKVWRDVIISQPDSHLSGNIKC
TAGQFQTAFFKMRPAVILNGFSSHQLQLIQQVLRKNFRDLVYVCTFGEDDTSEKRVVYSD
TDEDKILLMKDVHEDLLKSREARVKSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKF
VGPLPSSIKEFALSIHKIFPHIADTRHLMNVNQAVQKLMKQKSKSLSSAFSLLCPSSHSY
AEKPSSLSPVRIEVGGDETTSSCFVSGAKHEAGYDAYMTGCVFAQLCAYLDVKFEQLSPQ
DNLATNNKLQKHINLLSPSWNSGTVLDLSSGQERPDPGYMRRYPAAVYDNIVLIWGFMSK
VRPKEIKDCICKVFGSGSIKTVFSIDSTAALVQFKKQKTVNEFLDLKALLEKTDSAISIL
HPLSTILEGGQTRAVKYDTYRDICSSSELKYLFADQAEAFCATSKNQLQENVDHSLISGV
HQSIVDGTVLTSVNKGDGTKSGSMNEDDAAILASSIS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgcagggctgcctccgccgcctcctccgcgcgccgccgcccagggccctactctcccgc
gcgctctcatcctcgccgcctccgggaggcggcagcggggtggcggtgaagcaggtgacg
cgggggaacctggcggaggcgctggaggagctgcgggggcgcgtgcgggaggccacgttc
gtggggctcgacctggagatgagcggtgtcacgagtgctccctggagggacaccttcgag
ctcgaccgcgacgatgtgcggtacctcaagctccgcgactccgcggagcggttcgccgcc
ctgcagctcggcgtctgtcccttccgatgggaccccgccaaatccgccttcgtcgcctat
ccgcataacttctttatcttccctcgcaaagagcttagtgattgttcatctcatgagttt
ctttgtcagacaacttcaattgacttcctagcaaagtaccagtttgatttcaacacatgc
ttccgtgaaggaatatcttatttatccagagcacaagaggaagaagcactacagaaatta
aatttttttcatcaagatcgaccattttcatcttccgccacttccgaaggggatggagat
atgcctttaaagaggacggctgatattcttttcactgaaaggatgaaaatgaacttcaag
gtatggcgtgatgtgataatcagccagcccgatagccatttgtcaggaaacattaaatgc
accgcaggacaattccagacagctttcttcaaaatgcggccagctgttatacttaatggg
ttctcatcacatcagttgcagctaattcaacaggttttgagaaaaaactttagggatctt
gtttatgtctgtacatttggtgaggatgacacatctgaaaagagagtagtttattcagac
accgatgaggataaaatattgctgatgaaagatgtgcacgaagatctactgaaaagcagg
gaagcaagagtcaaatcagcaataggaatccgccatgtcattgaccttctttcatcggaa
aggaagttgattgttggccatagttgtttcctagatattgcccaagtgtacagcaagttt
gttggtcctcttccttcatctatcaaggaatttgccttaagcatccacaaaattttccca
cacatcgcagataccaggcatcttatgaatgtcaatcaagcagttcagaaactgatgaag
cagaaaagcaaatcactgtcttcagctttctcattgttgtgcccttcatctcattcatat
gctgagaagccatccagtctatctcctgtgagaattgaagttggaggagatgaaacaacg
tcttcttgcttcgtttcaggtgctaagcatgaagcagggtatgatgcatacatgactgga
tgtgtttttgcacagttgtgcgcttatcttgatgtcaaatttgagcagctctcacctcag
gataacctagccacaaacaataagctgcagaaacacatcaatcttttgtccccaagctgg
aacagcggaacagttcttgatttaagcagtggccaggagagaccagatccaggttatatg
agaaggtatcctgctgctgtgtatgataacattgttctcatctggggattcatgtctaag
gtcagaccaaaggaaattaaggattgcatctgcaaagtgtttggttcaggatccatcaag
accgtcttctccatcgattccactgctgcccttgtgcagtttaaaaaacaaaagactgta
aatgaattcttggatttgaaggctcttttagagaagacggatagtgctatctcaattcta
caccccttgtcaactatattagaaggaggccaaacacgagccgtgaaatatgatacctac
agagacatctgcagctcttctgaattaaagtatctttttgctgatcaagctgaagcattt
tgtgcaacttcaaagaatcagctccaagaaaatgttgatcacagtcttatatctggtgtg
caccagagtattgttgatggcacagtgctcacctctgtaaataagggagatggaacaaaa
tccggttctatgaatgaagacgatgctgccatacttgccagcagcatatcttag
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