Setaria viridis (green foxtail): 117864413
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Entry
117864413 CDS
T07951
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117864413
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117864413
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117864413
NCBI-ProteinID:
XP_034604408
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Position
7:32186065..32187741
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AA seq
357 aa
AA seq
DB search
MDPPPPQQPPPHPCNPYGAGHGGGEMPYQDADHRLRALAGRAEGFGRHAIGGLHGAVYHV
TSLQDDGRGSLREACRAAEPLWIVFEVSGTIHLQSYLRVASHKTIDGRGQRVVLTGKGLQ
LKSCHHVIVCNLMFEGGRGHDVDGIQIKPGSTNIWIDRCTLADYDDGLIDITRQSTDITV
SRCHFARHDKTMLIGADPTHIGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNW
GIYAVCASVEAQVVSQCNIYEAGGGPPKKTTVFKYMPEKAGDREDVVAGLVRSEGDAFLN
GALPCLIGGPAPGAQEAVFRPEHYYPRWTMEPASPALKDTIQLCAGWQPVPRPPDEC
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggatccccctcctccgcagcagccgccgccgcacccttgtaatccgtacggtgcgggt
cacggcggcggagagatgccgtaccaggatgcggaccaccggctccgcgcgctcgcgggc
cgcgccgaggggttcggccgccacgccatcggcggcctgcacggggccgtctaccacgtc
acgtccctccaagacgacggccgcgggagcctgagggaggcgtgccgcgcggcggagccc
ctgtggatcgtcttcgaggtgtccggcaccatccacctccagtcctacctccgcgtcgcc
tcccacaagaccatcgacggccgcggccagcgcgtggtgctcaccggcaaggggctccag
ctcaagagctgccaccacgtcatcgtctgcaacctgatgttcgagggaggccgaggacat
gacgtagacggcatccagatcaagcccggctccaccaacatctggatcgaccgctgcacg
ctcgccgactacgacgacggtctcatcgacatcacgcgacagagtacagacatcacggtc
tcaagatgccactttgcgcggcacgacaagacgatgctcatcggagccgaccccacgcac
atcggcgaccgctgcatcagggtcaccatccaccactgcttcttcgacggcacgcggcag
aggcacccgcgcctacgcttcggcaaggtccacctctacaacaactacacacgcaactgg
ggcatctacgctgtctgtgcgagcgtcgaggctcaggtcgtgtcccaatgcaacatctac
gaggcaggcggaggccccccaaagaagacgacggtgttcaagtacatgccggagaaggcc
ggcgaccgagaggatgtggtggccggattggtcaggtcggaaggggacgccttcctcaac
ggcgcgttgccctgcctgatcggtggccctgcacctggagcacaagaagctgtcttcagg
ccagagcattactacccgcgttggaccatggagccagcgtcgccggcgctcaaggacacc
atccaactctgcgccggatggcagccagtgccaaggccccctgacgagtgctag
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