Setaria viridis (green foxtail): 117864507
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Entry
117864507 CDS
T07951
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117864507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117864507
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117864507
mRNA degradation factors
5'-3' decay
Lsm complex
117864507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
117864507
NCBI-ProteinID:
XP_034604529
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All DBs
Position
7:20326882..20331122
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AA seq
128 aa
AA seq
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MSWAGPDEILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggccgggcccgacgagatcctcctctccacctccctcgccggcttcttggac
aagaagcttattgtcctgcttagagatggacggaaactgcttggcaccctgtgctcgttt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgttggggagcaa
tattgtgatgttcctcttggtctgtatgtgatccggggagagaatgttgttttaatcgga
gaattggaccgcgaaaaggatgaactccctgctcacatgacatgtgtttccgaagcagaa
attagaaaggccgagaaggcggaaagggaagcaagagacctgaaaggcacgatgaggaaa
cggatggagttcctagacttcgattag
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