Setaria viridis (green foxtail): 117865098
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Entry
117865098 CDS
T07951
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117865098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117865098
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117865098
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Utp13
NBCH_WD40
ANAPC4_WD40
Nup160
Ge1_WD40
WDR54
WD40_like
UTP15_C
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
117865098
NCBI-ProteinID:
XP_034605071
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All DBs
Position
7:complement(27872953..27878777)
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AA seq
883 aa
AA seq
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MASTQALKKNYRCDRSLQQFYTGGPFAVGRPPAGEGEGEGGAEADPFLACACGGEVRVVS
AADASAIGEPVDGDSEAITALTLSPDSRLLFAAGHSRLIRVWDLATRTCIRSWKGHDGPI
MAMACHASGGLLATAGADKKVCIWDVDGGFCTHFLRGHTGIVTTIMFHKDPKRLLLFSGS
EDGTVRVWNLETKKCVAVLKEHFSTVTSLTLSDDGQTLLSAGRDKVVTVWDVRKYSSKKT
IPTYEMIEAVSFIGSGSELLACLGIELVNMKGGSDGYFLTVGERGVVRIWCLESGRCMFE
QQSSDVTVNSENEETRRGFTSAVMLPNDQGLLCVTADQQFLFYCPKKTDEGTFQLSLYRR
LVGYNDEILDLKFVGDEEQYLAVATNLEQVRVYDVASMSCSYVLAGHTEIIVCIDTCVSS
SGKTLVVTGSKDNTVRLWDAERRRCIGTGKGHLGAVGSVAFSKKSKNFFVSGSSDRTIKI
WTWDDTLDDADDEVPLRAKAVVAAHDKDINSLSVSPNDGLVCSGSEDRTACIWKLPNLVS
SVVLKGHKRGIWSVEFSLVEQCVMTSSGDRTIKIWSVADGTCLKTFEGHTSSVLRASFLS
RGTQVISCGSDGLVKLWTIKTNECIATYDKHDGKVWALTVGRKTEMLATGGTDSILNLWH
DCTMEDKQEDFRKKEEEVLRGQELENAVSDADYTKAIQLAFELRRPHRLLELFSQLARRA
DSEDPIEKALLGLPKDGLRVLLEYIREWNTKPKFCHVAQFVLFRVLRTLPPTDILEIKGI
SELLEGLIPYSQRHFNRVDRLVRSTFLLDYTLMRMAVVDPDVDAGTTKDDMNGSSVENNE
TAEAQPASPITEKSSKKRKQGKSSKKGKEKKVKLASKDVSVEA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacgcaggcgcttaagaagaactaccgctgcgaccgctcgctgcagcagttc
tacacgggcgggccgttcgcggtcgggcgcccccccgccggcgagggcgagggcgaaggc
ggcgccgaggccgatccgttcctcgcgtgcgcatgcggcggggaggtgcgcgtggtgtcg
gccgcggacgcctccgcgataggggagcccgtcgacggcgactcggaggccatcaccgcg
ctgacgctgtcccccgactcccgcctcctctttgctgcggggcacagcaggcttatcagg
gtctgggacctcgccacccgcacttgcatacgcagctggaagggacatgatggtcctatt
atggccatggcgtgccatgcttctggtgggttgcttgcaactgccggagcagacaagaag
gtgtgcatatgggatgtggatggtggattttgcacacatttcttaagaggtcatacaggc
attgtgacgaccattatgttccacaaagatccaaagcgccttctgttgttttcaggaagc
gaagatggcactgtgcgagtatggaaccttgaaaccaaaaaatgtgttgctgtgctgaaa
gagcatttttcaacggtcacttcattgacattgtctgatgatggacaaacattgctcagt
gctgggagggataaggttgttactgtgtgggatgttcgtaagtacagctcgaagaagaca
atacccacgtatgaaatgatagaagctgtttccttcattggatcaggaagtgagctacta
gcttgtttgggcatagaactggtaaacatgaaggggggatcggatggttattttcttaca
gtaggtgaacgtggggttgtgcgcatctggtgcttggagagtggtcgttgcatgttcgag
cagcaatcatctgatgtaactgttaactcagagaatgaggaaaccagaagggggtttact
tctgctgttatgttgccaaatgatcaaggattgctatgtgttactgctgatcagcagttt
ttgttctattgtcccaaaaaaactgatgaagggaccttccaactgtccctatatagacgt
ctagtaggttataatgatgagattcttgacttgaagtttgtcggggatgaggaacaatat
cttgctgtagctactaacttggagcaggtccgtgtttatgatgttgcatcgatgtcatgt
tcttatgtactggctggccacacagaaattattgtttgcatcgacacctgtgtctcttct
tctgggaagacgcttgttgtaactgggagcaaggacaatactgtgaggttatgggatgct
gaaaggagaagatgtattggtactggtaaaggccatctgggagctgttggttctgttgca
ttctcaaagaaatcgaagaacttttttgttagtggcagcagtgatcgaaccatcaagatt
tggacctgggatgatacgcttgatgatgctgatgatgaagttcctctcagagctaaggct
gttgtagctgcacatgataaagatattaattctctgtctgtttcacctaatgatggcctt
gtttgcagtggttctgaggaccgaactgcttgcatatggaaactccctaacctggtgtcc
tctgttgtccttaaggggcacaagagaggaatctggtcggttgagttttctcttgttgag
caatgtgtcatgacatcctctggtgatagaacaatcaaaatatggtccgttgcagatggc
acgtgcttgaagacatttgagggtcatacatcaagtgtcctgcgagcttctttcctttca
cgtggaactcaagttatttcttgcggaagtgatggtctagtgaagctatggacaatcaaa
acaaatgagtgcattgctacttatgataagcatgatggaaaggtttgggcattgactgtt
ggcagaaaaactgaaatgcttgctactggtggaactgattctattctaaacctgtggcat
gattgcaccatggaagataagcaagaagatttccgtaaaaaggaggaagaagtcttaaga
ggccaggaattggaaaatgcagtgtcagatgctgactatacaaaagcaatacaacttgca
tttgagcttaggagaccacacaggcttctagagttattctcacagcttgccaggagggct
gattcggaggatccaatagaaaaggctcttcttggacttccaaaggatggcctccgtgtg
cttcttgagtacatccgtgaatggaatacaaagcccaagttctgtcatgttgcacagttt
gtgctttttcgggtattgaggactttgcctcccaccgatatcttggagataaagggtatc
agtgagctccttgagggcctaattccgtattcgcagaggcatttcaacagagtcgataga
ctagtgcgaagtacatttctgttggactatacattgatgcgaatggccgtggtagatcca
gatgttgatgcgggcacaaccaaagatgacatgaacggttcatcagtggagaacaatgaa
accgcagaggctcagcctgcttcgcccataacagagaagtcaagcaagaagagaaaacag
ggcaaatcaagcaaaaagggcaaagagaagaaagtgaagcttgcttcgaaggatgtttca
gttgaggcctga
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