Setaria viridis (green foxtail): 117865099
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Entry
117865099 CDS
T07951
Name
(RefSeq) uncharacterized protein At3g06530 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117865099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117865099
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117865099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_At3g06530
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
117865099
NCBI-ProteinID:
XP_034605072
LinkDB
All DBs
Position
7:25664091..25678500
Genome browser
AA seq
2156 aa
AA seq
DB search
MASIASQLQAIKSALGAAPEPARRPITRPSVLFDAKEAADIDLRAILPIALSGLEHLASV
DERFARYSNTLFRETSLEVNREQLTPKENDKLNKSISTYLRLLAGYLHLPSALKTLEYLI
RRYLVHVYNLDELLLSALPYHDTHAFVRIVQLLNLGNSKWAFLDGVKSSGAPPPRSVLVQ
QCIRDKAVLETLCNYATPTKEFSHSRTVVCFCTAVIVECLGAVQKLDTDIVQRVLGFVFD
SLNPEITGDQDYKAGALMIVGVLATRATLAPKLVQNLIFFVARTAQHDAFESVDLPWLRV
TVMAIISLVQSQSVHDFPKKALVILKDIRDFSGVLSVLSSEYNIERFIRLYVESLVDYST
SDDSCHTHLMETIETLPMEKSVERIVSKVLGSCSKVSRATGNRDMDRAGIWAKKILSAIE
IKYPLELHDAIRKFLEKSEINSTGGDSISEMFGLVFDDSKKMPTEISDSNIWFSLDHPKA
MVRQSALSKIATSGIFTNSTLNPQKLVNIQDAILRSLYDDNLSVVQAALSIEGLAAVASP
ESLLKAYDDVLTKCIKIINKGGSKASKASDVAVSCLEKMVMEYQFHHMEHAKDIAAVVFR
LLIVHPKTLRVNLKALELAKKIQWEFYTSSSLVYDEVTVQKMKENMSADSIASINMKNIV
AFAETFLANPNKHVEWLANSGRGTRFSRTVFLLVVLQALVPSEALDKQVSLCEACLPFLK
DEWHHVQPEDNGVGDEISIDKLEKCSIELVKHIFNSDTEALNARIIVCIFWGLLKVQSSY
IKQNSMIGSGGNAMLDDLFLFFVTSPGKNIFQKHLQYLIINCTGAPFQFISKYFLDEDLS
DRVQVESLRLLASICSKCASSESSILDESICMKLLLGFPSVILPLAHENRDIRSSAVKCI
EGLSLVWQRLSTSLPRNAGNTIKLPQCMSSPTFGIFLESLVNQKTMISSDAKFLPAYISS
MLSPRKDVTVPENLHERFDQPTKDALLHFILHSALKLTPYGKFMLLSVLKGVGGILLQAE
DVKSLFFDLLDCRDQYQNQHDSKNLSTHEMQILCLLLEVLLSVADHANIGFNMSEPLLRA
LKVDALAPDDPVVVMPCLTALRTLQPVFFDNLKADTKEKVFGRLISLFRTENIEIRNATR
DALLRINVHASIVVKFIELIVALGGARGQSKRTKRKDGLSRDASSSFEELFGERPIASIL
VSLLDILFLKKDVNQRPCLLQPLFQILSKLRSDLWVSGIVCQHTNQHDTSSETPDLSSSV
KESQHLILLVLKDITDTLHSSHEGAMFSSSDVDLLIEYIRSVKDVGTRNHGFSLIASLGK
ACPQVVSESIVDLFVAIGDAIKQDDSHSQRVLEDLLSVLVPCWLSRTSSIEKLLQIFIKA
LADIPEHRRLTLMVYILRTLGKESNLSTVIMHLLHSLVERISHPLSEHHGSLSALSQEWE
YGLAANVTDQYSYKLWFPCLSKLLKEIRVHEKQGVHLMLHLAMRLVLSKLQDTELIFELE
ADDAANFIQGSLGALMEEVVLCTVYTKDKKRDISGDIIKELRDSANTILKTITGWMSAST
YFRGITQLLDHSDSLVKRKALGILSETARGNSLVQNKQSKARKLKHSSVITAIKVDKISG
PYFSNLCLKILELIDRVVGSDTSVKIAAISSLETLAKEYPSDDPVYSKCLSTIINHIGSA
DAAMSSGLIHTAGSLIDVLGSKALPQLPLVVKNIMLIAHQVSCCPSGSYAHGSTKATTRL
SNQDTAMLLSSLTTIEVVVEKLGEFVNPYLKEILDLVVLHPECSSHMDTRLDAKAADVRK
LLTEKVPVRLILPPLLDLYSVAPNCGEASLSLAFQMLASLVSTMDRLAVGTYHVKIYEHC
LAALDIRRQHPDSLKNINIVEQSIIHAIITLTMKLTEGTFRPLFLRTLEWAESEVDQSSS
KKSLDRAISFYKLINKLAEQHRSLFTPYFKYLLEGSVQYLLEDALAGCKQKKKKKAKLDV
QVEQKDNLWGLKLWNLRALILKSLHKCFLYDNEQKVLDSSNFQVLLKPIVSQFVVEPPES
IESAVDAPSVEEVDEAIVLCLGQMAVTARSDVLWKPLNHEVLMQTRSDKVRPKLLGLKVV
RYMVQHLKEEYVGLLPETIPFLGELLEDVELPVKTLSQEILKEMETLSGESLRQYL
NT seq
6471 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgatcgcgtcgcagctgcaggccatcaagtcggcgcttggcgctgcgcccgag
ccggcgcgacggcccatcacccggccgtcggtgctcttcgatgcgaaggaggccgccgac
atcgacctccgcgccatcctgcccatcgccctctctgggttggagcaccttgccagtgtg
gacgagaggtttgctaggtacagcaacactctgttcagggagactagcctagaggtgaac
cgcgaacagctaacacccaaggagaatgacaaactcaacaagtccatctccacctacctt
cgccttctagctggctatttgcatcttccatctgccctgaagacacttgaataccttatc
cgccgatacctggtgcatgtatacaatttggatgagttgctgctgagcgcactgccgtac
catgatacacatgcatttgttcggattgtgcagttgctcaacttagggaatagtaagtgg
gcatttcttgatggcgtgaagtcctcaggtgcaccgccacccaggagtgttctagtgcag
cagtgcatcagggataaggctgtgctggagaccctctgtaactacgccacaccaacaaag
gaattcagtcactcaaggacagtcgtctgcttttgcactgctgtgattgtggagtgcttg
ggtgctgtccagaagcttgacacagatatagtgcagagggtattgggatttgtgtttgac
tctcttaatccggaaataacgggagatcaggattataaggctggtgctctgatgattgtt
ggagtacttgcaacgcgggcaactctagcaccaaaacttgtgcaaaatttgattttcttt
gttgcaaggactgcacaacatgatgcatttgagtcagttgacttaccatggcttcgtgtc
acggtgatggctattataagtcttgttcagtcacaatcggtccatgacttccctaagaag
gcacttgtgattttgaaggacatcagggatttttctggtgtactttctgtattatccagt
gagtacaatatcgagagattcattaggctttacgttgaatcattggttgactacagcact
tctgatgattcctgtcacacacacctcatggagactattgagactctaccaatggagaaa
tctgttgaaagaattgtgagcaaggttcttggcagctgtagcaaggtatctcgggccact
ggaaaccgagatatggatcgtgcaggcatttgggctaagaaaatcttgagtgcgatcgaa
ataaaatatccattggagctacatgatgctattcgtaaatttcttgagaaatctgaaatt
aactcaacgggaggggattctatatctgaaatgttcggcttagtgtttgatgacagcaag
aaaatgccaactgaaatatctgattcaaacatttggttcagtctggaccatccaaaggct
atggttcgccagtctgctctctcaaaaattgctacatctggcatcttcaccaacagtact
ctaaatccacagaaacttgtcaatatacaagatgcaatattacgcagtttgtatgatgat
aatctaagtgttgtccaagctgccttgtccatagaaggactagctgctgttgccagtcct
gaaagcctactaaaagcatatgatgatgtgctcaccaagtgcatcaaaatcattaacaaa
ggtggttcaaaagcgtcaaaggcgtctgatgtcgctgtttcttgcttggaaaagatggtt
atggaatatcaatttcatcacatggaacatgccaaggacatagctgcagtagtttttcgt
cttcttattgttcacccaaagactcttagagtgaacttaaaggccttggagctagctaag
aaaatacaatgggaattctacacaagtagttctcttgtatatgatgaggtcactgttcag
aaaatgaaggagaacatgagtgcagactccatcgcttccattaacatgaagaatatcgta
gcttttgctgaaactttcctggctaacccaaataagcacgtggagtggttggctaactct
ggaagaggaactagattttctagaactgtgtttctactcgtggtattgcaagcactagtt
ccctcagaagctttggacaagcaagtgagtctctgtgaagcttgtttgccattcctgaag
gatgaatggcatcacgtacagcctgaagataatggtgttggtgatgagataagcattgac
aagctggagaagtgcagtatagaattggtaaagcatattttcaacagtgacacagaggca
ttgaatgctagaatcattgtctgtatattttggggtcttctaaaggtgcagtcctcctat
attaagcagaactcgatgattggcagtggtggaaatgcaatgctcgatgatttgtttctc
ttctttgttacgtcacctggcaaaaatatctttcagaagcacttacagtatctcatcatt
aattgcactggagcaccttttcaatttatttcgaagtactttctggatgaagatttgtca
gatagagttcaagtggagagtctccgtttgcttgcttctatttgttctaagtgtgcttcg
tctgaaagtagtatcttggatgaaagcatatgcatgaagcttctactcggctttccttct
gttattctcccacttgctcatgagaacagggatataaggtcatctgctgttaagtgtatt
gaggggttatctttggtgtggcagcgcttgagcacttctctaccaagaaatgcaggtaac
accatcaaattgcctcaatgcatgtcatctccaacatttggtattttccttgagtcattg
gttaaccaaaaaaccatgatatcctcggatgcaaaatttcttcctgcatatatctcatca
atgctaagcccacgcaaagacgtgacagttcccgagaaccttcatgaaagatttgaccag
ccaacaaaagatgctctccttcatttcatcttgcactccgctttaaagctcactccttat
ggaaagttcatgcttttgtcagtcctgaaaggagtaggaggcatcttacttcaggcagag
gatgtgaagtctttgttctttgatcttctggactgtcgtgatcaatatcagaatcagcat
gattctaagaacttatccacccatgaaatgcaaatcttatgcttgcttttggaggttttg
ttgtcggtagcagatcatgcaaatattggttttaacatgtccgaacctctgttgagagca
ttaaaggttgatgctctggctcctgatgatcctgttgttgtaatgccatgtcttactgcc
ctgcggactcttcaaccagtgttctttgataatttgaaggctgacactaaggaaaaagtt
tttgggcgccttatttctttgtttcgaactgagaacatcgaaattcgaaatgccacacgg
gatgctctactgcgaattaatgttcatgcttccattgtggtgaaatttattgaattaatt
gttgcgcttggtggtgcaagaggacagtcaaaaagaacaaagagaaaggatggtctgagt
cgtgatgcatctagcagttttgaagagttatttggagaaagacctatagcttctattctt
gtctctcttctagatattttgtttcttaagaaagatgtgaaccaaaggccatgtctatta
cagccgcttttccaaattctatcaaagctccgttccgacctatgggtttcagggattgtt
tgtcagcataccaaccaacatgatacctcatctgaaacccctgatttatccagctccgtg
aaagaatctcagcacttgatactgctggtcctcaaagatattacggatacactgcattcg
agccacgaaggtgcaatgttcagcagctcagatgttgatcttcttattgagtacatacgg
tccgtcaaggatgtaggaactcggaatcatgggttttccttgatagcttctttgggaaag
gcttgcccacaagtggtgtcagagagtattgttgatttatttgttgctattggggatgct
ataaaacaggatgatagccattctcaacgtgttttagaggatttactatctgtcttagtt
ccatgttggttatcaaggacctcaagtatagaaaagcttcttcagatatttattaaagct
ttagcagatattcctgaacataggcggttgacgctcatggtttacatcttgaggacctta
ggaaaggaaagtaatttaagtactgtgatcatgcatctgctgcactcgttggttgagcgg
atttcacaccctctttctgagcatcatggaagcttgagtgctttgtcacaggagtgggaa
tatggattggctgccaatgttactgaccaatattcctataaattatggtttccatgtttg
agtaagctactaaaagaaatcagggtgcatgagaagcaaggtgtacatcttatgctacat
ttggcaatgaggcttgttctgtctaagttgcaagacacagagttgatttttgagcttgaa
gctgacgatgctgctaattttatccagggttctcttggagcacttatggaggaagttgtc
ctgtgtactgtgtataccaaagataaaaagagagatatttctggtgatattataaaagaa
ctcagagattctgcaaacacaatactcaagacgattacaggatggatgagtgcttcgaca
tatttcagaggaattactcagttgctggatcattcagacagtcttgtgaaaagaaaggca
cttgggatattgtccgaaactgcaagaggaaacagcttggttcagaacaagcaaagcaaa
gcacgaaaactgaagcatagctctgttattactgcgatcaaagtggacaagatatctggt
ccatatttcagcaacttgtgcttaaagattcttgaattgattgacagagtggttggttcg
gatacttcagtgaaaattgctgctatttcttcgcttgaaacgctagcaaaagaatacccc
tctgatgatccagtttacagcaagtgcctctcaacaatcattaatcacattggctctgct
gatgcagctatgtcttccgggttaattcatactgctggctctctgatagatgtgcttgga
tcaaaagctttaccacaactcccattagtcgtgaaaaatataatgctaatagcacatcag
gtttcatgttgcccaagtggaagttatgcccatggttctactaaagcaaccaccaggctt
tcgaaccaagatacagctatgctgctatcttcactgacaacgattgaggtggttgtggaa
aagctgggtgaatttgttaatccatatttgaaggaaatacttgatctggtggtattgcat
cctgaatgtagttctcatatggataccagattagatgcaaaagcagctgatgttcggaag
ctactgactgagaaagttccagtccggcttattcttcctcctttactggatctgtactct
gttgctcctaattgtggggaagctagcctttcattggcattccaaatgcttgctagtctt
gttagtacaatggacaggctggctgtaggaacttaccatgtgaaaatatatgaacattgt
ttagccgctcttgatatccgtcgccaacatcctgactctttgaagaatatcaatattgtg
gagcaaagtattattcatgccataatcactctcacaatgaagcttacagagggcactttt
aggccactatttcttcgcactttggaatgggccgagtctgaagttgatcaatcgtcatcg
aagaaaagtttggaccgtgcaatttctttttacaaattgatcaacaaacttgctgaacaa
cacaggtccttgtttacaccttacttcaagtacctacttgagggatctgtacaatatctg
ttagaagatgctttggccggttgcaagcaaaagaagaaaaagaaggccaaacttgatgtt
caagttgaacagaaggataatttatggggactaaaactgtggaatcttagagctctgatt
ttgaagtccttacacaagtgtttcctttatgataatgagcagaaggtcctagattcctct
aatttccaggttctcttaaagccgattgtttcccagtttgttgtggaaccaccagaatct
attgaatcagctgtggatgctccatcggttgaagaagtagatgaagctattgttttgtgc
ttggggcaaatggcagtcacggcacgctcggatgttctttggaagcctcttaaccatgag
gtgctgatgcagacaaggagcgataaagttcgccccaaattgctgggcctgaaggttgtc
aggtacatggtccaacacctgaaggaggaatacgtcggtcttctcccagaaaccatcccg
ttcctaggcgaattactcgaggatgtggagcttcctgtcaagacactgtcgcaggagatc
ttgaaagagatggaaaccctcagtggcgaaagcctccggcagtacctgtga
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