Setaria viridis (green foxtail): 117865349
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Entry
117865349 CDS
T07951
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117865349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117865349
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117865349
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
HECT type E3
117865349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
MMS19_N
Motif
Other DBs
NCBI-GeneID:
117865349
NCBI-ProteinID:
XP_034605412
LinkDB
All DBs
Position
7:complement(7118874..7133113)
Genome browser
AA seq
1867 aa
AA seq
DB search
METRSRKRAEASSSCATSSSRSSKRSRPNPNPNPPANTAAKPAPAPPRTRRSAAANPLPA
MDSSGDNNPNPNLLPRRRGRSSNADKGKEQQQPEPSESSRVREAERLLGLGFKGTEDDDD
AGFGAGAIPHSLTSASTALQGLLRKLGAGLDDILPSSALSAAAASSSSASGQLGGRLKKV
LVGLRADGEDGRQVEALTQLCEMLSIGTEESLRAFSVDSFVPVLVGLLNHESNPDIMLLA
ARALTHLCDVLPSSCSAVVHYGAVPCFCARLLTIEYMDLAEQSLQALKKISLEHPTACLR
AGALMAVLSYLDFFSTGVQRVALSTAANMCRKLPSDASDFVMEAVPLLTNLLNYHDSKVL
EHASVCLTHIVEAFSSSPEKLDELCNHGLVAQAASLISVSNSAGQASLSTSTYTGVIRLL
SICASGSPLASKTLLLLGISGILKDVLSGSGLVAGTTVTPTLTRPADQIIEIVKLADELL
PPLPVGTISLPMYSDVHMKGSSVKKSTCSKQGEPGSIENELSGREKLLRDQPELLHQFGM
DLLPIMTQVYGSSVSGSVRHKCLSVIGKLMYYSSAEMIQSLLSTTNISSFLAGILGWKDP
QVLIPALQIAEVLMEKLPEIFLKMFVREGVVHAVELLICPEFSGQVTPQMSQLDNHVDSI
TSSCSRRNRCRNNAVNTENNLPDEPKRSHSVIANALLSTTEVQNNDLCALVSNLAKSFKD
KYFPSEPGSTDISVTDDLLKLRVLCAKLNTTADTIKTKAKGKSKATMGNSFDVICNVEDQ
LDSIIAEMLSELSKGDGVSTFEFIGSGVVTALLNYLSCGSFGREKVPEANLPNLRHQAVR
RYKAFISVALPNYEDGNRTPMALLVQKLQGALSSLEHFPVVLSHSGRVQTLGGSRLVTGL
GTLSQPFKLRLCRAPGEKSLKDYSSNIVLIDPLASLAAVEEFLWPRVQRTESVSKPVLSS
ANNSESGAAISTAGALSIPSATQSARRASLRSKSSAATSGAINKDHQEGSINALKGKGKA
VLKSSLDEPKGPHTRNAARRKAASENDVELKPSNGHSTLEDEDLDASPVEIDDALMIDDD
DEDVSQDEDADHEVVLQGSRPACVPERVHDVRLGDADDSSVVSLANSNQAQPSSGSSTKN
TSSTGLDAAEFRSPSTFGSRGAMSFAAAAMAGLGSRGIRGSRDRSRATEHYNKLIFTAGG
KQLNKHLTVYQAVQRQVVHDDEDVDQLGGSDLPDDGNHFWGDVFTVTYQKADYAVEKGPV
GGSASAPKFSQSDSCKPLSRKQCTSLLDSILQGELPCDLEKSNQTYNILSLLRVLEGLNQ
LSPRLRLQATSDNFVEGKVATLDGLYGVGAKVPLEEFVNTKMTPKLARQIQDVLALCSGS
LPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQHPGDNNNTAIEREIRVGRL
QRQKVRVSRNRILDSAAKVMEMFSNQKAVLEVEYFGEVGTGLGPTSEFYTLLSHDLQRVD
LGLWRSHSTGNSGTQIDGNGYHLIGIKHESESLFESRNVVQAHLGLFPQPWPPSAAALEG
SKFFKVVEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLLLGQELELYDVLSFDTEFGKIL
QELQILVARKRFLESCCSDSRKIEELCFRGAPVEDLCLDFTLPGYPDYVLKEGGENVVVD
IYNLEEYISLVVDATVKTGIMRQVEAMKAGFNQVFDISSLQIFSPQELDYLICGRRELWE
PEILLEHIKFDHGYTSKSPAIVNFLEIMAEFTPEQQHSFCQFVTGAPRLPPGGLAALNPK
LTIVRKHSSSAANTTNATGAIESADDDLPSVMTCANYLKLPPYSTKAIMLKKLLYAINEG
QGSFDLS
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcgcagccgcaagcgggctgaggcctcctcttcttgcgcgacctcctcgtcc
cgctcctcgaagcgctcgcgtcccaaccctaaccctaacccccccgcaaacactgccgcc
aagcccgcgccggcgccaccacggacccgccgctccgccgctgccaaccccctccccgcg
atggactcctcgggcgacaacaatcccaaccccaacctgctgccgcgacgccgcggccgc
tcctccaacgcagataaaggtaaggagcagcagcagccggagccctctgagagctcccga
gtgcgtgaggccgagcggctactgggcttaggtttcaagggcactgaggacgacgacgac
gccggattcggtgctggtgccatcccccacagcctgacctcagcgagcactgctctccag
gggctgcttaggaagctgggcgctggcctggatgacatccttccttcgtcggccctgtca
gccgcagctgcgtcatcatcatcagcatccggacagttgggtgggaggttgaagaaggta
cttgtggggctgcgtgcggatggggaggacgggcggcaggtggaggcactgacacaactc
tgtgagatgctgtccattggcacagaagaatcactcagagcattctcggtggactcgttt
gtccctgtcctggttgggctgctcaatcacgagagcaacccagacatcatgctgcttgct
gcacgtgccctaactcacctctgtgatgtgcttccatcttcctgctctgctgttgtgcat
tatggtgctgtgccctgcttttgcgcccggcttctcaccattgaatacatggacttggcg
gagcagtctttgcaagctcttaagaaaatatccctggagcatccaactgcctgcttgcgg
gctggtgcgctaatggcagttctatcataccttgactttttctccacaggtgttcagaga
gttgcattatctacagctgctaatatgtgtaggaaacttccttccgatgcatccgatttt
gtaatggaagcggttccacttcttacaaatctactgaactaccatgattcaaaagtactg
gagcatgcttctgtctgccttacccatatcgtggaagctttttcatcatccccagaaaaa
ttggatgagttatgcaatcatggattggttgcacaagctgctagcctaatatctgttagc
aactcagcaggacaggcatccttgagtacatcgacatatacgggtgtgattcgtcttctc
tcaatatgcgcaagcggatcaccattggcatctaaaacacttctcctccttggaattagt
ggtatacttaaagatgtcctttcaggctctgggttggttgctggtacgacagtaacccct
actttaacaagaccagctgatcagattattgagatcgtgaagcttgcagatgagttgctt
cctccactacctgttggaaccatttcattacctatgtattctgatgttcacatgaaaggt
tcttctgtaaagaaatccacctgtagtaagcagggtgaacctggttcaatagaaaatgaa
ttatcaggtcgggagaagttattgcgtgatcagcctgaactcctgcatcagtttggtatg
gatttgttacctatcatgacacaggtgtatggctctagcgtaagtggatcagtacgccat
aaatgcttatctgtcattgggaaattaatgtactatagctcagccgagatgatccaatct
ctccttagcacaacaaacatttccagctttttagctggcattttaggttggaaagatcca
caagtgctgatccctgctcttcagatagcagaagttctaatggaaaagcttccagagata
tttttaaaaatgtttgtgcgggaaggcgttgttcatgctgtagagttacttatatgccca
gagttctctggtcaggtcactcctcaaatgtcacagctggacaatcatgtcgattccatt
acatcttcttgttctaggcgcaaccgctgtcggaataatgctgtgaatactgaaaacaac
ttgcctgatgaaccaaaacgttcccattctgtgattgccaatgcgctactaagcacaact
gaggttcaaaataatgatctttgtgctttagttagtaatcttgcaaagtcatttaaagat
aagtatttcccttcagagcctggctcaactgacatttcggtgactgatgacctccttaaa
ctgagggtgctttgtgcgaaactgaatacaacagctgacactatcaaaacaaaagctaaa
ggaaaatctaaggctacaatgggcaatagttttgatgtcatatgcaatgttgaagaccag
ttggatagtataattgctgaaatgttatctgagcttagcaaaggggatggtgtttcgaca
tttgagtttattggaagtggagttgttacagcattgctaaactatctgtcatgtgggtca
tttgggagggaaaaggtgcctgaagcaaacttaccaaatttgcgtcatcaggcagtgagg
cgatataaggcatttatatctgttgcccttccaaattatgaagatgggaatagaactcct
atggcattgctagttcagaaactgcaaggtgcactctcttcattggagcattttccagtt
gtgcttagccattctggaagggtacaaactttgggaggatcgcgtctggtgactggttta
ggaactctttcacagcccttcaagttgcgcctttgtcgagcgccaggtgaaaagtcgctt
aaggattattcatccaatattgttcttatcgacccgttggcaagtctggcagctgttgaa
gaattcctttggcctagagttcagcgcactgagtcagtctcaaaacctgtattgtcatct
gcaaataactcggaatctggagcagctatttccacagctggggcactatcaattccttca
gcaactcaatctgcacgtcgtgcctcattaaggtcaaagtcctcagctgccactagtggt
gcaattaacaaggatcatcaggaggggagcataaatgcattaaaaggaaaaggtaaagct
gttctaaaatcgagtttggatgaaccaaaaggcccacatactaggaatgctgcacgcaga
aaagctgcttcagagaatgatgttgaactgaagccatcaaatggccacagcacgttagag
gatgaagatcttgatgcttctccagttgagattgatgatgctttaatgattgatgacgat
gatgaggatgtctcacaggatgaagatgccgatcatgaggtggttctccaagggtctcgt
cctgcctgtgttcctgagagagtgcatgatgtaagattgggagatgctgatgattcgagt
gtcgtctcattggcaaatagtaatcaggcacagccctcatctggttccagtacaaaaaat
acttctagcacgggactggatgctgctgaatttagaagtccaagcacatttggttcacgg
ggtgcaatgtcctttgctgcagctgcaatggctggattaggtagtcgtggtattagaggt
agtcgagataggagtcgtgcaactgagcattacaataaattgatatttacagctggtggg
aagcagcttaacaaacatttgacagtatatcaagctgtacaacggcaagtagttcatgat
gatgaagatgtagaccagttaggtggctctgatttacctgatgatggtaaccacttctgg
ggtgatgtatttactgtaacatatcagaaggctgattacgcagtggagaaagggcctgtg
ggaggttcagcttcagcgccaaaattttcccagtcagattcttgcaaaccattatctaga
aaacagtgtacttccctccttgatagtattttgcaaggagagcttccttgtgatttagag
aaatcaaaccaaacctacaacatcttatcactcttacgtgtgttggagggcctgaatcag
ttatctcctcgtctgagactgcaggcaacctccgataattttgtggagggaaaagttgct
acgctagatggactgtatggtgttggagctaaggtacccctggaggagtttgtcaacact
aagatgaccccaaagcttgctcggcaaattcaggatgttcttgcactgtgtagtggcagt
ttaccatcttggtgttatcagctgacaaaagcttgtccttttctgtttccttttgaaaca
cgaagacaatacttctattccacagcttttgggttatctcgtgcactgcatcgtcttcag
caacatccgggtgataataacaacactgccattgaaagagaaattcgggttggtagattg
caacgccagaaagtccgtgtttctcgtaaccgtatcttggattcagcagctaaagttatg
gagatgttctccaatcagaaggctgttctagaagttgaatacttcggtgaagttggaact
ggacttggtccaacttcagagttttatactctcttaagccatgacctgcaaagggttgac
ttaggattatggagatctcactctacaggcaattctggcacgcaaattgatgggaatgga
tatcatttaataggtataaagcatgaatcagaatcactttttgagagcaggaatgtagta
caagcacaccttggtttgtttcctcagccctggccacctagtgctgctgcattggaaggt
agcaaattcttcaaagtcgtcgagtatttccgattagttggtcgtgtgatggcaaaagca
ttgcaagatggaaggcttcttgacttgcctttgtcgacagcattttacaaactattactt
ggacaagaacttgaattgtatgatgtactatcatttgatactgagtttggaaagattttg
caagagctgcaaattcttgttgcacgtaagcgatttctggaatcctgctgcagtgatagc
cgaaaaatagaagaattatgcttccgtggtgctcctgttgaagacctgtgtttagacttc
actcttccaggctatcctgattatgttctaaaggaaggtggagagaacgtggtggttgac
atttataacttagaagaatatatttctttggttgtggatgctactgttaagactggaata
atgcggcaagtagaggcaatgaaagcaggatttaatcaggtattcgacatatcatcactc
caaatattttctcctcaagaacttgattatctgatttgtggtcgccgtgaactttgggag
ccggaaatactgcttgaacatataaaattcgaccacggttatacctctaagagtcctgca
attgtcaattttcttgagatcatggcagaatttactcctgagcagcaacattctttctgc
caatttgtgactggtgctcctcggcttccacctggtggtttggctgccctaaatcctaaa
ttaactattgttaggaagcactcttcatctgcagcaaatactacaaatgcaactggagca
atagagtctgcagatgacgatttgcccagtgtcatgacttgtgctaactatcttaaactg
ccaccttactcaaccaaggctatcatgttaaagaaactgctttatgcgatcaatgaaggc
caagggtcatttgatctttcgtaa
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integrated database retrieval system
