Setaria viridis (green foxtail): 117865432
Help
Entry
117865432 CDS
T07951
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04142
Lysosome
svs04144
Endocytosis
svs05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117865432
04142 Lysosome
117865432
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117865432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117865432
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117865432
Membrane trafficking [BR:
svs04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117865432
Exosome [BR:
svs04147
]
Exosomal proteins
Proteins found in most exosomes
117865432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
IcmW
Motif
Other DBs
NCBI-GeneID:
117865432
NCBI-ProteinID:
XP_034605524
LinkDB
All DBs
Position
7:35285962..35295793
Genome browser
AA seq
1743 aa
AA seq
DB search
MAAANAPIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNSVVIIDMAMPMQ
PLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWKWI
TPKLVGLVTQTSVYHWSIEGDSEPTKMFDRTANLANNQIINYRCDPAEKWLVLIGIAPGA
PERPQLVKGNMQLFSVDQQRSQALEAHAASFATFKVVGNENPSTLICFASKTTNAGQITS
KLHVIELGAQPGKPGFSKKQADLFFPPDFQDDFPVAMQVSQKYGLIYVITKLGLLFVYDL
ETAAAVYRNRISPDPIFLTAESSSTGGFYAINRRGQVLHATVNDATVVPFVSGQLNNLEL
AVNLAKRANLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPETVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDMALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAFLQTKVLE
INLVTYPNVADAILANGMFSHYDRPRIAQLCEKAGLYLRALQHYSELPDIKRVMVNTHAI
EPQALVEFFGTLSREWALECMKDLLVVNLRGNLQIVVQVILFNFLRPIPSPYWQLFFLND
SNYCESLAHLQAAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIE
AAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYT
NNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECEKRN
RLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPFYDSRVVGKYCEKRD
PTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWDKVLQPENEYRRQLIDQ
VVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAI
KADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEGFAIFKKFNLNVQAVNVLLDNIRSIE
RAEEFAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDAAHFLDVIHAAEEANVYNDL
VKYLLMVRQKAREPKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEA
AKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICG
LNIIVQVDDLEEVSEYYQNRGCFNELIALMESGLGLERAHMGIFTELGVLYARYRYEKLM
EHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPDAWDHMQFKD
VCVKVANVELYYKAVHFYLQEHPDLINDMLNVLALRLDHTRVVDIMRKAGQLHLVKPYMV
AVQSNNVSAVNEALNELYVEEEDYERLRESVDMHDNFDQIGLAQKLEKHELLEMRRIAAY
IYKKAGRWKQSIALSKKDNMYKDCMETCSQSGDRELSEDLLVYFIEQGKKECFASCLFIC
YDLIRPDVALELAWMNNMIDFAFPYLLQFIREYSSKVDDLVKDKIESQNEERAKEKEEKD
LVAQQNMYAQLLPLALPAPPMPGMGGPPPPMGGMGMPPMGGMGMPPMGPGPMPAFGMPPM
GSY
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaacgctcccatcgccatgcgcgaggccctcacgctcaccagcctgggc
atcgccccgcagttcgtcaccttcacccatgtcaccatggagtcggagaagtacatctgc
gtccgcgagacctcgccgcagaacagcgtcgtcatcatcgacatggccatgcccatgcag
ccgctccgacgccctatcaccgccgactccgcgctcatgaacccgaacaccagaatcctc
gccctcaaagcccaaatacctgggactacacaggatcaccttcaaatatttaacattgag
gctaagactaagataaagtctcatcagatgccggagcaggttgtgttttggaaatggatc
actcccaagttggtgggtttagtaacgcaaacatcagtttatcactggtcaattgaaggt
gattctgagcccaccaagatgtttgataggacagcaaacttagcaaacaatcagatcatc
aactaccgatgtgacccagcggagaagtggcttgtgcttattggaattgcacctggtgcc
ccagagagaccacaactggtgaaggggaacatgcaacttttttctgttgaccaacagcgt
agccaggcacttgaagcccatgcagcatcttttgcaacatttaaggttgttggtaatgag
aacccatcaacccttatttgttttgcctcgaagacaactaatgctggacagattacttca
aagttacatgttattgaactgggcgcccagccagggaaacctggcttttctaagaaacaa
gccgacctctttttcccacctgatttccaggatgattttcctgtagctatgcaggtttca
caaaagtatggacttatctatgtaattacaaagcttggccttttatttgtatatgacttg
gaaactgccgcagcagtttacagaaatagaattagtccggaccctatattcttgacagca
gaatcttcttcaactggtggattttatgccatcaacagaagagggcaggttttacatgcc
acagttaacgatgcaactgttgtgccttttgtcagtggtcaattaaacaaccttgagcta
gctgtgaatcttgccaagagagccaaccttcctggtgcagagaacttggttgtacaaaga
tttcaggaactgtttgcacaaacaaaatacaaggaagcagctgagctggccgcagagtct
cctcaagggctcctgagaacacctgagaccgttgcaaaatttcagagtgttcctgtgcaa
gctgggcaaacacccccactgttgcagtactttggtacattgctaactcgagggaagctt
aatgccttcgagtctcttgagctatctcgacttgtcgtcaatcagaacaaaaagaacctt
ctggaaaattggttggcagaagacaaactagagtgcagtgaagaacttggagatcttgtc
aagactgtggataatgatatggcactaaaaatatacataaaggctagggcaacccctaaa
gttgttgctgcttttgctgaaaggagggagtttgacaagattcttatatactcaaagcag
gttgggtacactccagattatctgttcctcctccagaccattttacgtacagatccacag
ggtgctgtgaactttgctctcatgatgtcacaaatggagggaggttgtccagtagattat
aatactataactgatcttttccttcagaggaatatgatacgggaggcaacagcttttttg
ttggatgttctcaaaccaaatttgccagagcacgcttttcttcaaaccaaggttttggag
ataaacttggtgacttatccaaatgttgctgatgccattcttgctaatggtatgttcagt
cattacgaccgccctcgtattgctcagctgtgtgaaaaggctggcttgtacttgcgagct
ctccagcattactcagagttacctgatatcaagcgtgtcatggtcaatacccatgccatt
gagccgcaggcactcgttgagttctttggcaccctgtcaagggagtgggccttggagtgc
atgaaggaccttctagtagtcaatctgaggggaaatcttcaaatagttgtgcaggtaatc
ctgtttaatttcctgcgacctatcccctcaccctactggcagctcttttttcttaatgat
tctaattattgtgaatctttggcacatctgcaggctgcaaaagaatactccgagcagtta
ggagttgacgcttgcataaaactatttgagcaattcaaatcttatgagggcctttacttt
ttcttgggatcctatctgagctccagtgaggacccagatatccatttcaaatacatagaa
gcagctgccaggactggacagatcaaagaagttgaacgtgtaactagagagtctaacttc
tatgatgctgagaagacaaagaactttttgatggaggcaaaactacctgatgcccgtcca
ctgattaacgtttgtgaccgctttggttttgtgccagatctcactcactatctgtacaca
aacaacatgcttcggtatatcgaaggctatgtgcaaaaagtgaatcctgggaatgctccc
ttggtagtggggcaactacttgatgatgagtgtcctgaagattttattaagggtttgatt
ctctctgttcgttccctccttcctgttgagccactggttgatgaatgtgagaagaggaac
cgcctacgtttgctcactcagttcttggagcacttagtgagtgaaggtagccaagatgta
catgtccacaatgctcttgggaaaatcatcatcgacagcaacaataatcctgagcatttc
cttactactaacccattttatgactcacgtgttgtgggtaaatactgtgaaaagcgggat
cctacacttgctgttgttgcttacagacgtgggcagtgtgacgatgaacttattaatgtc
actaacaaaaactcactgttcaagctgcaagctagatatgttgttgagaggatggatggt
gatctatgggataaagttcttcagcctgagaatgaatacagaaggcaactcattgaccag
gtggtttcgaccgcattacctgagagcaagagccctgaacaagtatctgctgctgttaag
gctttcatgactgctgacctccctcatgaattgatcgagcttcttgaaaagattgttctt
cagaattccgcattcagtggaaacttcaatctgcagaacctgctcattttgactgccatc
aaggcagacccatccagagtcatggactatgttaacagacttgacaactttgatgggcct
gctgttggagaagttgctgttgaggcacagctgtatgaggagggttttgcaatattcaag
aagttcaacttaaatgtgcaggctgtcaatgttctcttagataacatccggagcatagaa
agggctgaagaatttgctttccgcgttgaagaagatgctgtttggagccaggttgccaag
gcccagttacgtgagggtctagtcagcgaagcaatcgagtccttcattcgtgcagatgat
gccgcacatttccttgatgtcatccatgctgctgaggaagcgaatgtgtacaatgattta
gtgaagtaccttctgatggtaaggcaaaaggcccgggagcccaaagttgatggagaactc
atctttgcatatgctaagattgacagactcagtgacattgaagagttcattcttatgcca
aatgttgccaaccttcaaaatgtcggtgaccgtctgtatgatgaagaactatatgaagct
gcaaagatcatctacgcgttcatctcaaactgggctaagctggctgttaccctagttaag
ctgaagcagttccaaggtgctgtggatgctgctcgcaaggctaacagtgctaagacatgg
aaggaggtctgctttgcttgtgttgacgctgaggagttccgtcttgcacaaatatgtggt
ctcaacattattgtccaggttgatgacttggaagaagtgagtgaatactaccaaaataga
ggatgcttcaatgaacttatagctctcatggagagtggtcttggacttgaacgtgcacac
atgggcatcttcacagagcttggagttctgtatgctagataccgctatgagaagcttatg
gagcacatcaaacttttctccacccgtctcaacattcctaagcttatccgggcttgtgat
gaacagcagcactggaaagaacttacgtacctctacatacagtatgatgaatttgacaat
gctgccaccactattatgaaccactctccagatgcatgggatcatatgcagttcaaggat
gtttgtgttaaagttgcaaatgttgagctatattacaaggcagttcacttctatttacaa
gagcaccctgatctcatcaatgatatgctaaatgtgcttgcgcttcgtttggatcatacc
agagttgttgacataatgcgcaaggctggacagttgcatcttgtgaaaccttatatggtt
gcagttcagagtaacaatgtctctgctgtgaatgaagcgttgaatgagctttatgttgaa
gaggaagactatgagagactccgtgaatcagttgacatgcacgataactttgaccagata
ggtctggcccagaagcttgagaagcatgagttgcttgagatgaggaggattgctgcctac
atttacaagaaggctggcagatggaagcagtccattgctctatcaaagaaagacaacatg
tacaaggattgcatggagacatgctcgcagtctggtgaccgtgaactgtcggaggacttg
cttgtctatttcattgagcaggggaagaaagaatgctttgcttcttgcctcttcatttgc
tatgacttgatacgtccggatgttgcccttgagcttgcatggatgaacaacatgatagac
ttcgctttcccatatctgttgcagttcattcgcgaatacagcagcaaggttgatgattta
gtgaaggacaaaattgagtcgcaaaatgaggaaagagcgaaagagaaagaggagaaagat
cttgttgctcagcagaacatgtacgcccagctgcttcctctcgctttgcccgctccgccg
atgccaggcatgggcggtcctccacctccgatgggtggaatgggcatgcctccgatgggt
ggaatgggcatgcctccgatgggccctggtccgatgccagcatttgggatgccaccaatg
ggaagctactag
DBGET
integrated database retrieval system
