Setaria viridis (green foxtail): 117866442
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Entry
117866442 CDS
T07951
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117866442
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117866442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gag_p6
Motif
Other DBs
NCBI-GeneID:
117866442
NCBI-ProteinID:
XP_034606541
LinkDB
All DBs
Position
1:complement(32170398..32179133)
Genome browser
AA seq
1717 aa
AA seq
DB search
MRTRFLAADYFAPSPSAAASSEPFPSLPVPTLPPDPHLPNPSPFPADFLPVASVAENDLD
SLPVGSALSEFLAAIIPQPLPVPDIPAADEGLDDYLYGRGVYGKGFSSTDPVAFEIHKGL
DEMSHEKGEKEEGSSLGASALDKKWELLKELKFEVVEVDDLPRKIASFDDEDPDGGVTFS
LGVPDVKIHLDFIDIDTETTITYPAEVAESIYQVEKIPVKHADDEDCPYARDGYCLEIAG
LEHGLIIPQLEVSRNSWELDECPAKAVISNIFLNVAENLNGGAQVCLPSFDSTEFLRSCD
MDMLAFVCEDAPRVEYQADKPITAKDVAEMDLVRINDNILLEKKSALYPLKPDGTCSDLP
CSILLEEVEIIDFPSDDAFKMLVQSEKAEMNASDEIFKDDFDQARSFYESVVSSELTLVD
DKFKSLPTPILTDDKAVRSMLLPIEEVLCSLKPLPLSAADGIYLDWHLLSEGPCSRESCS
THASMVEEVKPCGLSSELQISCQQTPALGIDFLEEYQRSSKLQHEDMRNKIYYVPEPISH
DPSAKLETAQKYKQESDVTGHSHMEKSSEKASTLFESMSRSNVRNYYLNVKNVTNKVRNN
ENVSTLDIPPSKQQAVPFSIRPKVDKLIEIHPVSLSDLIRGLIKDIHVNYTSALQESTYF
RHFFSDGQGLSISKQKLLELITGEGSEGLYNPCKDEDKMDLIVLYALKQVAYYLCFFGLH
AAYLYIGNLTGSFQNIPETLRNIQCCIGEARLKAEKQLFESHPSLSDIEAILRSNTQIGQ
KILIVSDRAFWLPLGRKLTAMKMTSAEVGTYPSATYSDPVVKANSKTWMLEELWKSDCIL
LDNKNIPASFPFSEFCMILEYGGPNKSSTLLSLAPKLDGLPPLHFLYVPVDGEDFPVALV
EDNHTDKDPKSTLDAVLHTLQKDLQEKMNKMRIFDSLNFIPATNQQQHLQEKLSNHLITD
PSKKVHVDGQLNNQGNLDEKNIVGSHNFVPAAEQLNSLNQIATVNSQKSVHAVEKSSSTS
SVSTNVIKSPQDNQSASDLPFSVKTDSTNLGRLSAPEVVIVVNTGNHGKHMLFSRRSSYQ
QILALEKEGMQIVERDVDLPVDLILSATVCLLWYDTGTFGSSELTISADASSITNFIEDI
ATNILMSLSFCFSGCIMVFEVENHFLSAVMEASDSLYASAASLDMNLQLFFSQAPKSTDQ
IILDCIGNVVRKNQAPSPDIPESESLAESFLTAFPSIIPPSAHMIISSACLVDFLGWSHE
QRTQAVEKYRLPPQSISLLSALCKFGELGESRSVMTECSSIDSDISSALLQPPRKKKKRP
MQDFSVAINDPACPNPRDQLCGDYVEHDKVFSASKLRKFSPIEDTMPELPEIFIVDQSLN
MGREGVSYQPRKHDVDAAARNPMIDDGFISEFSPNFRTYSERTSSMVDTCDFSWQPELGA
KQPIRSSFPTSRSSFCRTSSHPTFPSAPEISNDPGEWDVSCGIDQTRTGHLHGDLATSSR
RNDLASRYHEPRQETMQGPASSQSFLKQDFGYHGASQGSGWEMDYLRQMNENRIARQERS
RCNSSAAMSNSRLRDSSYRIPSAPPIESFSYQRNTDTPSRDQNPANTESFRYRRNINTPL
RDQSPSNGAHRHGKGRRGTKAQSHSVRTGFKAQPSINHEKSIVPSIEPTWTPLDKRARQK
LSFATYGKEKQSKLVWRHQSSPGVGCGFRKRYREEGT
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgcggactcgcttcctcgccgccgactacttcgcgccgtcgccgtcggcggccgcctcc
tccgaacccttcccttccctccccgtcccgactcttcctcccgatcctcacctccccaac
ccgtcccccttccccgccgatttcctccccgtcgcaagcgtcgccgagaatgatctcgat
tcgctccccgtcggctccgcgctctcagagttcctcgccgccatcatcccgcagcccttg
cctgtgccggatatccccgcagccgacgagggcttggatgattatctctacggtaggggt
gtgtatgggaaaggttttagctcgacggatcctgttgctttcgaaatccacaagggattg
gacgagatgagccacgagaagggcgagaaggaagagggatccagtttgggggcctctgca
cttgacaagaaatgggagctgttgaaggagctcaagtttgaggttgtagaggtcgatgac
ctgccgagaaaaattgcatcgtttgatgatgaagacccggatggtggtgtcaccttttcg
cttggtgtcccagacgtgaaaatccatctggatttcattgatattgacactgagacaaca
ataacatatccggctgaagttgcagaatctatttatcaagtagaaaaaattcctgtaaaa
catgccgatgatgaggactgtccttatgcaagagatggatactgcttggaaattgcagga
ctagagcatggcttaataatacctcaattggaggttagtaggaattcttgggagcttgat
gagtgcccagcaaaggcagtgatatccaatatatttcttaatgttgctgaaaacttaaat
ggtggagcacaagtttgtcttccatcatttgactcaactgagttcttgagatcatgtgat
atggacatgttggcctttgtttgtgaagatgccccacgtgtggagtatcaagcagataaa
ccaattacagcaaaggatgtagcagaaatggatcttgtgaggatcaatgataatatttta
ctcgagaaaaagtcagcattataccctctcaaacctgatggtacctgttcagacttgcct
tgctctattctcttggaggaagtagagatcatcgactttccttctgatgacgccttcaag
atgcttgttcagtcagagaaggctgagatgaatgcatctgatgaaatattcaaagatgac
tttgatcaagcaaggagtttttatgaatcggtggttagctctgagttgactctagttgat
gataaattcaaatcactacctacgcctattttaactgatgataaagcagtgagatctatg
ctcctccctatagaagaagtactatgctccctgaaaccacttcctctatctgcagcagat
ggaatttatttggattggcatcttttatcggaagggccatgcagccgggagagctgttct
actcatgcaagcatggttgaggaggtaaaaccttgcggtttaagttctgagctgcaaatt
agttgtcaacaaacgccagctcttggcattgattttctggaggagtatcagagaagttca
aagcttcaacatgaggacatgcggaataagatttattatgttcctgagcctatatctcat
gatccatcagctaagttggaaacagctcagaagtataaacaagaaagtgatgttacaggt
cacagccacatggagaaatcttcagaaaaggcatcaaccttgtttgagtcaatgtcacga
tccaatgtgcgaaactactacttgaatgtcaagaatgtcactaataaagtaaggaataat
gagaatgtgtctactttagacatcccaccttcaaaacaacaagcagttcctttttcaatc
agaccaaaagttgacaaactcatagagattcatcctgtcagcctctcagatcttatccga
ggccttatcaaagacatccatgtaaattatacatctgctttgcaagaaagtacatatttc
agacattttttctcagatgggcaaggtttaagcatttcaaagcaaaagcttcttgagctg
ataactggagaaggttcagaaggtttgtataatccctgtaaagatgaagataaaatggat
cttatcgtactgtatgcactgaagcaggttgcatattacctatgtttctttggtctgcat
gctgcctatctgtatataggcaatttgactggaagctttcaaaatatccctgagacatta
agaaatattcaatgctgcattggtgaagcacggttgaaagctgaaaagcaattgtttgag
tctcatccgtcattgtctgacattgaggcaatccttagatctaatacccaaattggtcaa
aagattcttatagtttctgatagagctttctggttgccattgggtcgaaagctaactgcc
atgaagatgacatctgctgaggttggaacatacccttctgcaacttattcagatccggtg
gtcaaggcaaactctaaaacttggatgctagaagaattatggaaatcagactgcattctg
ctagataacaagaacattccagcatcattccctttcagtgagttttgcatgatactggaa
tatggaggtccaaacaaatcatctaccttgttatccctggctcccaaattagatggtttg
ccaccactgcatttcctctatgtcccagtcgatggtgaagattttccagttgctcttgtc
gaggacaatcatacggacaaggatccgaaatccacattggatgctgttttgcatacactt
cagaaagacttgcaggaaaagatgaacaaaatgcgtatttttgactcattgaactttata
ccagcaacaaatcaacagcagcatctgcaggaaaagctgagcaatcacctcatcactgat
ccatcaaaaaaagttcatgtggatggtcaacttaacaatcagggaaatctggatgaaaag
aatattgtcggttcacacaactttgtgcctgcagctgaacagctcaattccttgaaccaa
atagccactgtcaattcacaaaaaagtgtgcatgcagttgagaagagtagctccacttct
tctgtatctaccaatgtgataaaatctccccaagacaaccaatcagctagtgacctccct
ttcagtgtgaaaactgacagcaccaacttaggaagattgtctgccccagaggtggtgatt
gttgttaatactggaaatcatggaaagcatatgctgttctctcgaagatcatcttatcag
cagatactagctttggagaaagaaggaatgcagattgtagaacgagatgttgatctgcct
gtggacctaatacttagtgccacagtttgtttactatggtatgataccggaacctttggg
tccagtgagttaacaatatcagcggacgcatccagtataacaaattttatagaagatatt
gctaccaacattctgatgtcacttagcttctgtttcagtggctgcataatggtcttcgag
gttgaaaaccacttcctttctgctgtaatggaggcatctgattctctatatgcttcagct
gctagcctggacatgaacttgcagctgtttttctcacaagcacccaaatcaacagatcaa
atcattctcgattgcatcgggaatgtggttaggaagaatcaagctccttctccagatata
cctgaatccgaaagtctggccgaatcatttctcacagcattcccttctattattcctccg
tctgcccacatgataatttcttctgcctgtcttgtggatttccttggatggtcacatgag
caacgcactcaggctgttgaaaagtatcgtttgccaccgcagagcatttctctcttaagt
gctttgtgcaaatttggtgagctaggtgaatcaaggtccgtaatgactgaatgctcttcc
atagattcagatatcagcagtgcattattgcagcccccaaggaaaaagaaaaagcgcccc
atgcaagacttttcagtagcaatcaatgatcctgcctgccctaaccctcgtgatcaattg
tgtggtgattatgtagaacatgacaaggtgttctcagcgtctaagttaaggaaattctct
cccatagaggatacaatgcctgagctcccagaaatctttattgtagatcaaagtttgaat
atggggagggaaggtgtctcttatcagccaagaaagcatgatgtggatgcagctgctagg
aatccgatgatagatgatggcttcatcagtgagttctctccaaacttcagaacatacagt
gaaaggactagcagtatggtggacacatgcgatttctcctggcaacctgaattgggagct
aaacagccaatcagaagctcctttcccaccagcagatcatcattctgcagaacttccagc
catccaacatttccatccgcaccggagatcagtaatgaccctggtgagtgggatgtttcg
tgtggtatagatcaaacaaggacaggtcatttgcatggggatttggccacaagttctcgc
agaaacgatctggccagcaggtatcatgaaccaagacaagaaacaatgcagggtcctgca
agttctcaatcttttctgaaacaggattttggttatcatggagcatcacaaggctcaggg
tgggaaatggattatctaaggcagatgaatgaaaatagaatagcacgccaagagcgatct
agatgcaattcttcagcagcaatgtcaaattcaagactgagggatagctcatatagaatt
ccaagtgctcctcctattgaatctttcagttaccaaagaaatacagacactccttcgaga
gaccagaaccctgcaaatactgaatctttcagatatcgaagaaatataaacactcctttg
agggatcagagcccttcaaatggggctcacaggcatggcaaaggcagaagaggaactaaa
gcacagagccatagcgtaagaacaggtttcaaggcacagccaagtataaatcatgaaaag
agcatagtgccgtccattgagcctacatggactcctcttgacaagagggcaagacagaaa
ctttcatttgcaacatatgggaaggaaaagcaaagcaagctggtctggagacatcaaagc
agccctggtgttggatgtggcttccggaaaagataccgggaagaaggtacttag
DBGET
integrated database retrieval system
