Setaria viridis (green foxtail): 117866550
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Entry
117866550 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117866550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117866550
03041 Spliceosome [BR:
svs03041
]
117866550
03009 Ribosome biogenesis [BR:
svs03009
]
117866550
03016 Transfer RNA biogenesis [BR:
svs03016
]
117866550
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117866550
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117866550
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117866550
Complex C
U4/U6.U5 tri-SnRNP related factors
117866550
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117866550
Transfer RNA biogenesis [BR:
svs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117866550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117866550
NCBI-ProteinID:
XP_034606682
LinkDB
All DBs
Position
8:complement(4822835..4829511)
Genome browser
AA seq
1008 aa
AA seq
DB search
MGEEAENTSKRKAPDSSGVEDPSPPAPASTAQSQAEADPAAKRRNTSRSCIHEVAVPKSY
EAAKDEAVHGTLANPEFNGEMAKQYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVA
EYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLQPNATCLVMTTEI
LRAMLYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATE
FAEWICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDESGQFREDNFGKLQDSFS
KQNNQLDGRRGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHH
AMSMSKLDFNTEDEKECIEQVFHNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPI
IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSG
RAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYSILNLMSRVEGQFT
AEHVIRHSFHQFQYEKALPEIVQKITRLEDEATLLDSSGEIDLAEYHKLGLDISELEKKI
MSEMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASGTLPPALSASRSNSYI
VDTLLHCSSSSNENGSRSKPCPPRPGEKGEMHVVPVPLPLISGLSSVRINIPPDLRPPEA
RQNILFAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEELEQKQCSHRLHKSGQS
EQELSWYQRKADLNSEIQQLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGR
AACLIDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSGPMMQL
QEAARKIAEVQRECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVI
RLARRLDEFLNQLRAAAEAVGEVNLEEKFKKASESLRRGIMFSNSLYL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcagagaacaccagcaagcgcaaggcgcctgactcgagcggggtggag
gatccgagcccgccggcgccggcgtcgacggcgcaatcgcaggcggaggcggacccggcg
gccaagcgccggaacacctcccggtcgtgcatccacgaggtcgctgtcccgaagagctac
gaggcggccaaggacgaggcggtgcacgggacgctggcgaacccggagttcaacggggag
atggccaagcagtacccgttcaagctagaccccttccagagcgtctccatcgcgtgcctg
gagaggaacgagtcggtgctcgtctccgcgcacacctccgcagggaagaccgtcgtcgcc
gagtacgccatcgccatggcgttccgggacaagcagagggtcatctacacctccccgctc
aaggccctgagcaaccagaagtacagggagctcagccaggagttcacagatgtcgggctg
atgacaggcgatgtcacgctccagccgaatgccacgtgcctggtcatgactaccgagatc
ctcagggccatgctctacaggggctctgaggtgatcaaggaggttgcttgggttatattc
gatgagattcattacatgaaggatcgcgagagaggagtcgtgtgggaggagagtataatt
ttcctgccccctgccatcaagatggtctttctgtccgctaccatgtcgaacgcgaccgag
tttgcggagtggatatgcagtctgcacaagcagccctgtcacgttgtgtatacggacttc
aggccgacaccgttgcagcactatgtgtttccaattggtggttctggtctctaccttgta
gtagatgaaagcgggcagttcagagaggataactttgggaagctacaggactcatttagt
aagcaaaataatcaattagatggaaggagaggtggtggacctaaagcgagtggtcgaatt
gcaaaaggtggaagcgcctctgggaattctgacatatacagaattgtcaagatgatcatg
gagcggaagtttcaaccagtcataattttcagctttagtagaagagaatgtgagcaccat
gccatgtctatgtcaaaacttgacttcaacactgaagatgaaaaggaatgcatcgagcaa
gttttccataatgctattggttgtttagtcgaagaagatagaagtttacctgctatagag
ttgatgttgccgcttcttaaacgaggcattgcagtacaccattctggactacttcccata
atcaaagagctggtggaattgctctttcaagaaggccttgtgaaagctctctttgctact
gagacatttgccatgggtcttaatatgcctgcaaaaacggttgttttcacatctgtcaaa
aaatgggatggtgatactaaccgctatattggttctggagaatatatacagatgagtgga
agagctggccggcgtggcaaggatgaacgtggcatttgtgttataatgatagatgagaag
atggaaatgagtgttatcaaggacatggtgttaggcaaaccggcacctcttgtcagtact
ttccggctgagctattacagtattctgaacttaatgagccgtgtggagggccaatttact
gcagaacatgtgattaggcattcattccatcagtttcagtatgagaaggcattgccagaa
atagttcagaagatcactcggttggaggatgaagcaaccttgcttgactcctcaggagag
attgatcttgctgaatatcacaaattggggcttgatatatctgaacttgagaagaaaata
atgtctgagatgattagaccagagagggctttgttatatttggttcctggaaggctggtt
aaagtgagggatggttcaaccgactggggatggggtgtggttgtaaatgtagtgaagaaa
cctccagcatctgggactcttccccctgcattaagtgcatcacgcagcaatagctatata
gtggataccttgcttcactgctcttctagttccaatgagaatggatcacgttcaaagcca
tgcccgcctcgcccaggggagaagggtgaaatgcatgtggtacctgtaccattgccttta
atatctggtctaagcagtgttagaatcaacattcctccggatctacgaccacctgaagca
aggcaaaatatactttttgcagtgcaagaactaggaaagcgctacccccaaggccttccg
aagctacatccaataaatgacatgggtattcaagaacctgagctagtagacttggttcat
aaacttgaggaacttgaacagaaacaatgttctcaccgacttcataagtctggtcaaagt
gagcaggaactatcatggtaccaaagaaaagcagatttgaatagtgaaattcagcaattg
aagtcaaagatgcgggattcacagctacaaaaattcagagatgaacttaggaaccggtca
cgcgttctgaagatgcttggtcatattgatgctgatggtgttctccagctaaagggacgt
gctgcctgtttaatagacacaggggatgagctgcttatcactgaacttatgttcaatggt
acatttaatgatctcgatcatcatcaagttgcttcccttgctagctgctttgtaccttgc
gataaatcaagtgagcaaatacgcctaagaaatgaactttctgggccgatgatgcaactt
caggaggctgcgagaaaaatagctgaggtacaacgagaatgcaaattagaagtaaatgtg
gaggaatatgttgaatcaacctgcagaccctacctgatggatgtcatatactgctggtcg
aggggagccacctttgcagaggtgatggaaatgaccgacatttttgaaggaagtgtcata
aggcttgccagaaggctggatgaatttctgaatcagttgagagccgcggctgaagccgtt
ggggaggttaaccttgaggagaagtttaagaaggcgagcgagagcttgcgtcggggcatc
atgttttccaactcattgtatctgtaa
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