Setaria viridis (green foxtail): 129388413
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Entry
129388413 CDS
T07951
Name
(RefSeq) RSC chromatin remodeling complex subunit RSC8
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129388413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
129388413
03036 Chromosome and associated proteins [BR:
svs03036
]
129388413
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129388413
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129388413
PBAF complex
129388413
GBAF(ncBAF) complex
129388413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
129388413
NCBI-ProteinID:
NP_001406552
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All DBs
Position
7:complement(22286687..22290977)
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AA seq
564 aa
AA seq
DB search
MSPPAAGAAATSGDGPPSSPRELYTIPASSGWFRWDGIHETERRALPEFFGGAGGAGFGT
ATRNPRIYREYRDFIIARYREDPARRLTFTEVRRALVGDVTLLRKLFAFLDASGLINFSA
SSSSSGTASRQQEVGVVVEAPVGLQVTPRPPASYFAEEKRGGAGEERENGFRLPPLTSYS
DVFGEWTPGKVPICGFCGEECNDEKFETLQDGFKVCSKCSKSNNDNKGEGNKCPGDKKES
VDNHASSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTI
NGKSVSRLHMNQATDGKMNQHITKESSSHSTEMVDGMQIDGNEDSADKSVEEHPPTKRRR
LFSSMDATASLMEKLALLTTSSSPDVVAAAADAAIKALGNENPEARKAFRLSEREFKTKA
FASNHAQQIDHKVGNKDVEMHGRTGSDKKQEKKFIANAYQVRAAVATAIGVAAARAKMLA
DQEEREMELLMASIIETQLRKMQYKIKHYEELESVMEQEHATTQQVKGSLVNEWLKVLEQ
AFRTGVSLPRDELLIKLFLNQSTA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggcggccggcgcggccgccacctccggcgacggaccgccgtcgtcgccg
cgagagctctacaccatcccggcctcatccggttggttccggtgggacgggatccacgag
acggagcgccgcgcgctgccggagttcttcggcggggccggcggcgccgggttcgggacg
gcgacgcgcaacccgcggatctaccgcgagtaccgcgacttcatcatcgccaggtaccgc
gaggaccctgcgcgccgcctcaccttcaccgaggtccgcagggcgctcgtcggggacgtc
acgctcctccggaagctcttcgccttcctcgacgcctccggcctcatcaacttctcggcc
tcctcctcgtcctcgggcaccgcgtcgcggcagcaggaggtgggggtcgtcgtggaggcg
cccgtggggttgcaggtgacgccgcggccgccggcgtcctacttcgccgaggagaagcgg
ggaggggcgggcgaggagagggagaatgggttccgcctgcccccgctgacctcctacagt
gatgtgtttggagaatggacgcctgggaaggtccctatatgtgggttttgcggcgaggag
tgcaatgatgagaagtttgagacgttgcaggatggttttaaagtatgttcaaagtgttcc
aaaagcaataatgataacaagggagaagggaataaatgtcctggtgacaaaaaggagagt
gtggacaaccatgcttccagtgcatggacagatgcggagacgttactccttttagaagga
gtcctaaaacatggagatgactgggatcttattgcccagcatgtccgcacaaagaataaa
tcagaatgcatagcaaggcttattcagttgccttttggtgaacatatgctgggcacaata
aatggtaaatctgttagcaggctccatatgaaccaggcaactgatggaaaaatgaaccag
cacattacgaaggagtcttcaagccactcaactgaaatggttgatggcatgcagattgat
ggaaatgaagatagtgctgataaatcagttgaagaacatcctcctacaaaacgcagacgg
ttattttcttcaatggatgctaccgcttcattaatggagaagttagcactcctgacaaca
tcaagtagcccagatgttgttgctgcagctgctgatgctgcgattaaagctttgggcaat
gaaaacccggaagcaaggaaagcctttcgcctcagtgagcgagaatttaagactaaggca
ttcgcttcaaaccatgcccaacagatcgatcacaaagttggcaataaggatgtggaaatg
catggccggactggttctgataagaagcaggaaaagaagttcattgctaatgcataccaa
gtgagggcagctgttgctactgctattggtgtagctgctgcccgtgctaaaatgctcgca
gaccaggaggagcgagaaatggagctcctaatggcatcaataattgaaactcagctaaga
aagatgcaatacaagatcaaacactatgaggagctagagtcggtcatggagcaggagcat
gccactacgcagcaagtgaagggatccctcgtgaatgaatggctaaaggtcctggagcaa
gcattccggactggagtgtcactaccgagagatgaattgctcataaagctgttcctgaac
cagtccactgcatga
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