Streptomyces vietnamensis: SVTN_16505
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Entry
SVTN_16505 CDS
T03586
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
svt
Streptomyces vietnamensis
Brite
KEGG Orthology (KO) [BR:
svt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svt03016
]
SVTN_16505
Enzymes [BR:
svt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SVTN_16505
Transfer RNA biogenesis [BR:
svt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SVTN_16505
Prokaryotic type
tRNA splicing ligases
SVTN_16505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJF65762
UniProt:
A0A0B5I5X6
LinkDB
All DBs
Position
complement(3726557..3727750)
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AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWADPASVEGGAMQQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGLHREAVDPK
RLYQFPTAGWGDFWSRFDGVADAVKFRRERAGQQMGTLGSGNHFIEFCLDSSGAVWLMLH
SGSRNIGKELAEYHIGEAQKLPHNQGLVDRDLAVFVADTPQMAAYRHDLFWAQEYAKYNR
AIMMALFQEVVRREFRKAKVTFEPVISCHHNYVAEERYEGMDMLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRSAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKSIEKVIDQQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgcctggcgcgaaagtaccgatcaggatgtgggccgaccccgcg
tcggtcgagggcggcgccatgcagcagttgcagaacgtggcgacgctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggcgcgaccgtcggttcggtgatc
gcgatgcagggtgcggtctgcccggcggcggtcggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtccctgacggcgaacgacctgccgggcgacctgtcccgcctccgctcg
aagatcgagcaggcgatcccggtgggccggggcctgcaccgcgaggcggtggacccgaag
cggctgtaccagttcccgacggcggggtggggcgacttctggtcgcggttcgacggggtc
gcggacgcggtgaagttccgccgcgaacgtgcgggtcagcagatgggaaccctcgggtcg
ggaaaccatttcatcgagttctgcctcgactcgtccggggcggtgtggctcatgctgcac
tccgggtcccggaacatcggcaaggagctcgccgagtaccacatcggcgaggcgcagaag
ctgccgcacaaccaggggctcgtcgaccgtgacctggcggtgttcgtcgcggacaccccg
cagatggccgcctaccggcacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
gcgatcatgatggcgctcttccaggaggtcgtccgccgggagttccgcaaggccaaggtg
accttcgagccggtgatctcctgccaccacaactacgtggcggaggagcggtacgagggc
atggacatgctggtcacgcggaagggtgcgatccgggccgggtccggggagttcgggatc
atcccgggctcgatgggcacgggctcgtacatcgtgaagggcctggggaacgcggcgtcc
ttcaactcggcctcgcacggtgccggccggaagatgagccggagcgcggccaagcggcgc
ttctcgacgaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatcccgggtgcctacaagtcgatcgagaaggtgatcgaccagcagcgg
gacctggtggaggtcgtcgccaagctgaagcaggtcatctgtgtgaagggctga
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