Streptomyces vietnamensis: SVTN_27660
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Entry
SVTN_27660 CDS
T03586
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
svt
Streptomyces vietnamensis
Pathway
svt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVTN_27660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svt03019
]
SVTN_27660
03016 Transfer RNA biogenesis [BR:
svt03016
]
SVTN_27660
Enzymes [BR:
svt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SVTN_27660
Messenger RNA biogenesis [BR:
svt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SVTN_27660
Transfer RNA biogenesis [BR:
svt03016
]
Prokaryotic type
tRNA degradation factors
SVTN_27660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
DUF2017
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AJF67602
UniProt:
A0A0B5IAY9
LinkDB
All DBs
Position
6137566..6139785
Genome browser
AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGAFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKRPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQI
VETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIKGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC
KAQSDLAAKAAKPTGEFPVYLDYQDDVLEALSAAVKDELAQALTIAGKQERETELDRIKD
LAAEKLLPAFEGREKEIAGAYRALTKKLVRERIIKDKVRIDGRGITDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISEEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLAIGSKVQVEIAEIDQRGKLSL
IPVIADEDGAEGDKDDAAK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaacggcgccttcggtacccgc
accatccgcttcgagaccggccgtctcgccaagcaggccgccggctccgccgtcgcctac
ctggacgacgacacgatggtcctctccgcgaccaccgcctcgaagcgccccaaggaccag
ctcgacttcttccccctgacggtggacgtcgaggagcggatgtacgcggccggcaagatc
cccggctccttcttccgccgtgagggccgcccctccgaggacgccgtcctcacctgtcgt
ctgatcgaccgcccgctgcgcccctccttcaagaagggcctgcgcaacgagatccagatc
gtcgagacgatcatggcgctcaaccccgaccacctgtacgacgtggtcgcgatcaacgcc
gcctcctgctccacgcagctcgccggcctgcccttctccggcccgatcggcggcacccgt
gtcgccctgatcaagggccagtgggtcgcgttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgccggtcgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagctggtcaagggcggcgccgaggcgccg
accgaggaggtcgtcgccgccggtctcgaggccgcgaagcccttcatcaaggtcctctgc
aaggcccagtcggacctcgccgccaaggccgccaagcccaccggcgagttcccggtctac
ctcgactaccaggacgacgtcctggaggcgctctccgccgccgtcaaggacgagctcgcc
caggcgctcaccatcgccggcaagcaggagcgcgagaccgagctcgaccgcatcaaggac
ctcgccgccgagaagctcctcccggccttcgagggccgcgagaaggagatcgcgggcgcc
taccgcgcgctgaccaagaagctggtccgcgagcgcatcatcaaggacaaggtccgcatc
gacggccgcggcatcacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgc
gtgcacggctcggcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggcgagaccggccgcgtgggctcgccc
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccctcgtcccggtcctcccg
acccgcgaggagttcccctacgcgatccgccaggtgtccgaggccctcggctccaacggt
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggcccccgtcgccggcatcgccatgggtctgatctccgaggagatcgacggccag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggtacgaaggagttcgtcaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtccccgaacgccccg
cggatcatcaccgtcaagatccccgtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgccgccgacggcccggccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggtacggtcgtcaag
accaccaccttcggtgccttcgtctccctgctcccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctcgccggtggcaagcgcgtggagaacgtcgaggacgtgctcgcg
atcggctccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctctccctg
atccccgtgatcgcggacgaggacggcgccgagggtgacaaggacgacgctgccaagtga
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