Streptomyces vietnamensis: SVTN_27695
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Entry
SVTN_27695 CDS
T03586
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
svt
Streptomyces vietnamensis
Pathway
svt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVTN_27695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svt03019
]
SVTN_27695
Messenger RNA biogenesis [BR:
svt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVTN_27695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AJF67608
UniProt:
A0A0B5ID58
LinkDB
All DBs
Position
6144584..6146269
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVIPLGGLGEIGRNMTVFEFDGRLLIVDCGVLFPEEEQPGI
DLILPDFTIIRDRLDDIEGIVLTHGHEDHIGAVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGDREQLGPFDCEFVAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
MDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRNVFANAPKRIIVAS
FASHVHRIQQIIDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGAMTGIPKD
HIVIAEDGVVVDLVDGRARITGKVQAGYVYVDGLSVGDVTETSLKDRRILGEEGIISVFL
VVDSSTGKIVGGPNIHARGSGIEDAAFDAVIPKIDQALNKSAQDGVVEPHQLQQLIRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcgccccgccgaagctgcccaagggcggcctgcgc
gtcatcccgctcggtggcctcggtgagatcggccgcaacatgacggtcttcgagttcgac
ggccgtctgctgatcgtcgactgcggcgtcctcttccctgaagaggagcagcccggcatc
gacctgatcctgccggacttcaccatcatccgggaccgcctcgacgacatcgagggcatc
gtgctcacgcacggccacgaggaccacatcggtgccgtcccgtacctgctccggctgaag
ccggacatcccgctcatcggctccaagctgaccctcgccctcatcgaggcgaagctccag
gagcaccgcatccgcccctacaccctcgaggtgaaggaaggcgaccgcgagcagctgggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctggccgtcgcc
atccgcacccccgcgggcatggccgtcgccaccggtgacttcaagatggaccagctcccg
atggacggccggctcaccgacctccacgcgttcgcgcggctcagcgaggagggcatcgac
ctcctgctgtccgactcgacgaacgccgaggtcccgggcttcgtcccgccggagcgcgac
atctcgaacgtcctgcggaacgtcttcgcgaacgccccgaagcgcatcatcgtggccagc
ttcgccagccacgtgcaccgcatccagcagatcatcgacgccgcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctgggc
tacctccgggtcccggccggcctcgtcgtggacgtgaagaccctcgacgacctgccggac
gacgaggtcgtgctggtctgcacgggttcccagggcgagcccatggcggccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtccccggcgacacggtgatcctcgcgtcc
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcgaacgtggtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctcatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgagctcggcgcgatgacgggcatccccaaggac
cacatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacggccgcgcccgcatc
accggcaaggtccaggcgggctacgtgtacgtggacggcctctcggtcggcgacgtcacg
gagacctccctcaaggaccgccgcatcctgggcgaggaaggcatcatctcggtcttcctg
gtggtcgactcctccaccggcaagatcgtgggcggcccgaacatccacgcccgcggctcc
ggcatcgaggacgccgccttcgacgcggtgatcccgaagatcgaccaggccctcaacaag
tcggcccaggacggcgtcgtcgaaccccaccagctccagcagctgatccgccgcaccgtc
ggcaagtgggtctccgacacctaccgccggcgcccgatgatcctcccggtcgtcgtcgag
gtctga
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