Streptomyces vietnamensis: SVTN_31855
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Entry
SVTN_31855 CDS
T03586
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svt
Streptomyces vietnamensis
Pathway
svt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVTN_31855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svt03019
]
SVTN_31855
03400 DNA repair and recombination proteins [BR:
svt03400
]
SVTN_31855
Enzymes [BR:
svt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVTN_31855
Messenger RNA biogenesis [BR:
svt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVTN_31855
DNA repair and recombination proteins [BR:
svt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SVTN_31855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
DUF6401
HHH
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJF70096
UniProt:
A0A0B5IC47
LinkDB
All DBs
Position
7071400..7073487
Genome browser
AA seq
695 aa
AA seq
DB search
MSDAARVLHRVFGYSSFRGEQQEIIEQVVGGGDALVLMPTGGGKSLCYQIPALVRAGTGV
VISPLIALMQDQVDALRALGVRAGFLNSTQDPYERQAVEQAFLADELDLLYLAPERLRTE
GTQRLLDRGTVSLFAIDEAHCVAQWGHDFRPDYLALSMLHERWPKVPRIALTATATPATH
AEIAKRLGLEEARHFVAGFDRPNIQYRIVPKNNPIKQLLELIRTEHDGDAGVVYCLSRAS
VEKTAAALVEHGIDAVPYHAGMDARTRAANQARFLREDGVVVVATIAFGMGIDKPDVRFV
AHLDLPKSVEGYYQETGRAGRDGEPATAWLAYGLQDVVQQRKMIDGSEGDETHRRSLAMH
LDAMLALCETVDCRRVRLLEYFGQTGKPCGNCDACLTPGESWDGTVAAQKLLSTVWRLAK
ERRQKFGAGQIIDILQGKRTAKVIQFDHDQLSVFGVGSDLGTAEWRGVVRQLLAQRLLAV
EGDYGTLVLTEDSGEVLGGRRQVPMRKEKAVAPARKESGARSGKGARVPVDLPAAAVPVF
EALRAWRAATAREQGVPAYVVFHDATLREIATRMPATVEELGTVGGVGEAKLTKYAEGVL
DTLAQTGGAGTGGADPDGAPASSAPAAPASSAPAAPAASAPATPASSASAVPAPAAAPVA
SMPSARRAEPDVPPFYDEEPPFDFDELEPPWDEDE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atctccgacgccgcccgggtgctgcaccgcgtcttcggctacagctccttccgcggggag
cagcaggagatcatcgagcaggtcgtcggcggcggcgacgcgctcgtcctgatgccgacc
ggcggcggcaaatcgctctgctaccagatcccggccctggtcagagcgggtacgggcgtc
gtgatctcgcccctcatcgccctgatgcaggaccaggtggacgcgctcagggcgctcggg
gtgcgggccggattcctgaactcgacacaggacccgtacgagcggcaggccgtcgagcag
gcgttcctcgcggacgagctcgacctgctctacctggcccccgagcggctccgcaccgag
ggcacccagcggctgctcgaccggggcacggtgtcgctcttcgcgatcgacgaggcgcac
tgcgtcgcccagtggggccacgacttccggcccgactacctcgccctgtccatgctgcac
gagcggtggccgaaggtgccccggatcgcgctgacggcgaccgccaccccggccacccac
gccgagatcgcgaagcggctcggcctggaggaggcccggcacttcgtcgccggcttcgac
cggccgaacatccagtaccgcatcgtcccgaagaacaacccgatcaagcagctcctggag
ctgatcaggaccgagcacgacggggacgcgggcgtcgtctactgcctctcgcgcgcctcg
gtggagaagacggcggccgccctcgtggagcacggcatcgacgccgtcccgtaccacgcc
ggcatggacgcccggacgcgcgcggcgaaccaggcccgcttcctgcgggaggacggggtc
gtcgtggtcgcgaccatcgccttcggcatgggcatcgacaagccggacgtccgcttcgtg
gcccacctcgacctgccgaagtcggtcgagggctactaccaggagaccggccgcgcgggc
cgcgacggcgagccggccacggcctggctggcgtacggcctccaggacgtcgtccagcag
cgcaagatgatcgacggctccgagggcgacgagacgcaccgccgctccctggccatgcac
ctggacgccatgctcgccctctgcgagacggtcgactgccgccgcgtgcggctcctggag
tacttcgggcagaccggcaagccgtgcggcaactgcgacgcctgcctgacgccgggcgag
tcctgggacgggaccgtcgccgcgcagaagctgctgtccacggtgtggcggctggccaag
gagcggcgccagaagttcggcgccggccagatcatcgacatcctccagggcaagaggacg
gccaaggtcatccagttcgaccacgaccagctgtcggtgttcggcgtcggctcggacctg
ggcaccgccgagtggcgcggggtcgtccgccagctcctcgcacagcggctgctcgcggtg
gagggcgactacgggacgctcgtgctcaccgaggacagcggcgaggtcctcggcgggcgc
cgccaggtcccgatgcgcaaggagaaggcggtcgcccccgcccgcaaggagtccggggcc
cgctccggcaagggcgcccgcgtaccggtcgacctgcccgcggccgccgtgccggtcttc
gaggcgctccgcgcctggcgggccgcgacggcgcgcgagcagggcgtgccggcgtacgtc
gtcttccacgacgccacgctccgcgagatcgcgacccgcatgcccgccaccgtcgaggag
ctcggcaccgtcggcggcgtcggcgaggccaagctcaccaagtacgccgagggcgtcctc
gacaccctcgcccagaccggcggcgcggggaccggcggtgcggatcccgacggggcccct
gcctcctccgcgcctgcggcccccgcctcctccgcgcctgcggctccggccgcgtccgcg
cccgcgacccctgcctcctccgcgtccgcggtcccggcgcctgccgccgccccggtcgcc
tccatgccgtcggcgcgcagggcggagccggacgttccgccgttctacgacgaggagccg
ccgttcgacttcgacgagctcgaaccgccgtgggacgaggacgagtag
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