Streptomyces violaceoruber: B1H20_00955
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Entry
B1H20_00955 CDS
T05124
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svu
Streptomyces violaceoruber
Pathway
svu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H20_00955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svu03021
]
B1H20_00955
03019 Messenger RNA biogenesis [BR:
svu03019
]
B1H20_00955
Transcription machinery [BR:
svu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B1H20_00955
Messenger RNA biogenesis [BR:
svu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B1H20_00955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_22
ATPase_2
AAA
AAA_14
NACHT
DUF3086
Motif
Other DBs
NCBI-ProteinID:
ARF60108
UniProt:
A0A1V0U518
LinkDB
All DBs
Position
214355..215494
Genome browser
AA seq
379 aa
AA seq
DB search
MTTTLEHPATREQRSVRVAGLLDTTDDGPGTLRVRGGLPSPDDVRVPLSLIRRHGLRRGD
AVEGDCDRPGVLTAVHRVGGAAPEALRGRPRFGDLTPVHPHERLRLETPRGGPAPRLLDL
VAPVGKGQRGLIVAPPRTGKTVLLQQVAASVAANHPEAHLMVVLLDERPEEVTDMRRSVR
GEVYASTFDRPAKEHIALAELAVERARRLVEQGRDVVVLLDSLTRLCRAHNNAARAGGRT
LSGGVDAAALAGPKKLFGAARCAEEGGSLTILATALVETGSRADDFFFEELKSTGNMELR
LDRSAADARIFPALDIARSGTRREELLFGRAELAAVRALHRALATQDGPAALQVLLDKVR
RTPDNAAFLRKVLPTVPDA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacaccccgcgacacgggagcagcgctccgtccgggtcgccggc
ctcctcgacaccaccgacgacgggcccggcacgctccgcgtccgcggcggtctcccctcc
cccgacgacgtccgggtgccgctttccctgatccggcgccacgggctacgcaggggcgac
gccgtcgagggggactgcgaccggccgggcgtcctcaccgcggtccaccgcgtcggcggg
gccgctccggaggccctgcgcggccgcccccgcttcggcgacctgacgccggtccacccg
cacgaacggctgcggctcgaaacgccccgcggcgggcccgccccgcgcctcctcgacctg
gtcgcgcccgtcggcaaggggcagcgcgggctcatcgtcgcgccgccccggaccgggaag
accgtgctgctgcaacaggtggccgcgtcggtcgccgcgaaccatcccgaggcgcacctg
atggtggtgctgctcgacgaacggccggaggaggtcacggacatgcgccgctcggtacgc
ggcgaggtgtacgcgtcgaccttcgaccggcccgcgaaggagcacatcgccctggccgag
ctcgcggtcgagcgcgcccggcgcctcgtcgagcagggccgggacgtggtggtcctgctg
gactccctcacccggctgtgccgggcccacaacaacgcggcccgcgcgggcggccggacg
ctgagcggcggtgtggacgccgccgctctggccggccccaagaagctgttcggcgcggcc
cgttgtgccgaggagggcggttcgctgaccatcctggcgaccgcgctggtggagaccggc
tcgcgggccgacgacttcttcttcgaggagttgaagagcacggggaacatggagctgcgg
ctggaccgttccgcggccgacgcccggatcttcccggctctcgacatcgcccggtccggt
actcgccgggaggagctgctgttcggccgggccgagttggccgccgtacgggctctgcac
cgggccctggcgacgcaggacggcccggccgccctccaggtgctgctcgacaaggtgcgg
cggaccccggacaacgcggcgttcctgcggaaggtgctgccgacggtgccggacgcctga
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