KEGG   Streptomyces violaceoruber: B1H20_13980
Entry
B1H20_13980       CDS       T05124                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
svu  Streptomyces violaceoruber
Brite
KEGG Orthology (KO) [BR:svu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:svu03016]
    B1H20_13980
Enzymes [BR:svu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     B1H20_13980
Transfer RNA biogenesis [BR:svu03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    B1H20_13980
 Prokaryotic type
   tRNA splicing ligases
    B1H20_13980
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ARF62383
UniProt: A0A1V0UAV6
LinkDB
Position
complement(3247217..3248410)
AA seq 397 aa
MSYVEIPGVKVPIRMWADPATVEDGAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDAVDPG
RLHGFSTAGWDDFWGRFGGIAEAVKFRQERATKQMGTLGSGNHMIEFCLDSDGAVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQGIIDRDLAVFISDTPQMADYRNDLYWAQEYAKYNR
AIMMALFKDVVRREFKKAKPVFEQEISCHHNYVAEERYDGTDLLVTRKGAIRAGSGEYGI
IPGSMGTSSYIVKGLGNEMAFNSASHGAGRRMSRGAAKRRFTVRDLEEQTQGVECRKDSG
VLDEIPAAYKPIEQVMEQQRDLVEVVAKLKQVICIKG
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgtcgtacgtagagataccgggggtgaaggtccccatccgcatgtgggcggaccccgcg
acggtcgaggacggcgcgatgcagcagctgcgcaacgtctccaccctgccgtggatcaag
ggcctcgccgtcatgccggacgtccacttcggcaagggcgcgacggtcggctcggtcatc
gcgatgcacggggcggtgtgcccggcggcggtgggcgtggacatcggctgcggaatgtcg
gcggtgaagacctccctcaccgcgaacgacctccccggcgacctgtcccgcctgcgctcc
aagatcgagcaggccatcccggtcggccgggggatgcacgacgacgcggtggacccgggt
cggctgcacgggttctcgacggcgggatgggacgacttctgggggcggttcggcggaatc
gccgaagcggtcaaattccgccaggaacgcgccacaaagcagatgggaacgctcggctcc
ggaaatcacatgatcgagttctgtctcgacagtgatggggcggtgtggctgatgctccat
tccggctcccgcaacatcggcaaggaactcgccgagcaccacatcggcatcgcgcagaag
ctcccgcacaaccagggcatcatcgaccgggacctcgcggtcttcatctcggacaccccg
cagatggcggactaccggaacgatctgtactgggcgcaggagtacgccaagtacaaccgc
gcgatcatgatggcgctcttcaaggacgtggtccgcagggagttcaagaaggcgaagccg
gtcttcgagcaggagatctcctgccaccacaactacgtggccgaagagcggtacgacgga
acggacctgctggtcacccgcaagggagcgatccgcgccggctccggcgagtacgggatc
atccccggctcgatgggcaccagctcgtacatcgtgaagggcctcggcaacgagatggcg
ttcaactcggcctcccacggcgccggtcgccgaatgagccggggcgcggccaagcgacgc
ttcaccgtgcgtgacctggaggagcagacgcagggcgtcgagtgccgcaaggactccggc
gtgctggacgagatcccggccgcgtacaagccgatcgagcaggtcatggagcagcagcgg
gacctggtcgaggtcgtcgccaagctcaagcaggtcatctgcatcaagggctga

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