Streptomyces violaceoruber: B1H20_21075
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Entry
B1H20_21075 CDS
T05124
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svu
Streptomyces violaceoruber
Pathway
svu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H20_21075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svu03019
]
B1H20_21075
03400 DNA repair and recombination proteins [BR:
svu03400
]
B1H20_21075
Enzymes [BR:
svu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1H20_21075
Messenger RNA biogenesis [BR:
svu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1H20_21075
DNA repair and recombination proteins [BR:
svu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B1H20_21075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ARF63591
UniProt:
A0A1V0UEM9
LinkDB
All DBs
Position
4802402..4804501
Genome browser
AA seq
699 aa
AA seq
DB search
MDGTTGTVTGTETDGGTGAGAESEARRTLHRVFGYESFRGEQGEIIEHVVAGGDAVVLMP
TGGGKSLCYQIPSLVRRGTGVVVSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRSME
AQFLAGELDILYLAPERLRLDSTLSLLARGEVSVFAIDEAHCVAQWGHDFRPDYLALSVL
GERWPDVPRIALTATATNATHEEITRRLSMPDAKHFVASFDRPNIQYRIVPKTEPKKQLL
SFLKEEHAGDAGIVYCLSRNSTEKIAEYLSRNGVEAVPYHAGLDAGTRAAHQARFLREEG
LVVVATIAFGMGIDKPDVRFVAHVDLPKSVEGYYQETGRAGRDGEPSTAWMAYGLQDVVQ
QRKLIQGGEGDEAFRRRAASHLDSMLALCETVQCRRAQLLTYFGQEPTAPACGNCDTCLT
PPETWDGTVVSQKLLSTVVRLKRERNQKFGAGQIIDILLGRKTAKVIQFDHDQLSVFGIG
EELAEAEWRGVVRQLLAQGLLAVEGEYGTLVLTDKSATVLGREREVLLRKEPKKPTTRSS
SSAGGSRGGKGKAAAADLPESAVPVFEALRAWRGAAAKEQGVPAYVIFHDATLREIATVH
PTTIGELGGISGLGEKKLATYGEGVLEVLAETSPGASSETSPAPASAPREAPASARPQVQ
AAPAPASRPAPARPQTPAAPAQQYGDPEFAWDEEPPEYE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggacgggaccaccgggacggtgaccggcaccgagaccgacggcggcaccggcgcgggc
gccgagagcgaggcgcggcgcacactgcaccgcgtcttcggttacgagtcgttccgcggc
gagcagggcgagatcatcgagcacgtggtggcgggcggcgacgcggtcgtgctcatgccg
accggcggcgggaagtccctctgctaccagatcccgtcgctggtccgccgggggaccggc
gtcgtcgtctccccgctgatcgccctcatgcaggaccaggtcgacgccctgcgcgcgctc
ggcgtccgggccggcttcatgaactccacgcaggatttcgacgagcgccgctcgatggag
gcgcagttcctcgcgggcgagctggacatcctctacctggcgcccgagcggctgcggctg
gactccacgctctccctgctggcccgcggcgaggtctccgtcttcgccatcgacgaggcg
cactgcgtcgcccagtggggccacgacttccgcccggattacctggccctgtccgtgctc
ggcgagcgctggccggacgtgccgcgcatcgccctgacggcgaccgcgacgaacgccacg
cacgaggagatcacccgccggctctccatgccggacgcgaagcacttcgtcgccagcttc
gaccggccgaacatccagtaccggatcgtgccgaagaccgagcccaagaagcagctcctc
tccttcctcaaggaggagcacgccggggacgcgggcatcgtctactgcctctcgcgcaac
tccacggagaagatcgcggagtacctcagccgcaacggtgtggaggccgtgccctaccac
gcgggcctggacgccgggacccgtgccgcgcaccaggcgcggttcctccgcgaggagggg
ctcgtcgtcgtcgcgacgatcgcgttcggcatgggcatcgacaagccggacgtccgcttc
gtcgcccacgtcgacctgcccaagtccgtcgagggctactaccaggagaccggccgcgcg
ggccgcgacggggagccgtcgacggcctggatggcgtacgggctccaggacgtcgtccag
cagcgcaagctcatccagggcggcgagggcgacgaggcgttccgccgccgggccgcctcc
cacctggactcgatgctggccctgtgcgagacggtccagtgccgccgggcccagctcctc
acctacttcggccaggagcccacggcccccgcctgtggcaactgcgacacctgcctcacc
ccgccggagacctgggacggcaccgtcgtctcgcagaagctgctctccacggtggtacgg
ctcaagcgcgagcggaaccagaagttcggcgcgggccagatcatcgacatcctgctcggc
cgcaagaccgcgaaggtcatccagttcgaccacgaccagctgtcggtcttcggcatcggc
gaggagctggccgaggcggagtggcgcggtgtggtccgccagctcctcgcgcaggggctg
ctcgccgtcgagggggagtacggcacgctggtcctgaccgacaagagcgcgacggtgctc
ggccgcgagcgggaggtgctgctccgcaaggagccgaagaagcccacgacccgctcgtcg
tcctcggcgggcggctcccgtggcggcaagggcaaggcggccgccgccgacctccccgaa
tccgccgtcccggtcttcgaggcgctgcgcgcctggcgcggggcggccgcgaaggagcag
ggcgtccccgcgtacgtgatcttccacgacgcgacgctgcgggagatcgcgaccgtccac
ccgacgacgatcggggagctgggcggtatcagcggcctgggcgagaagaagctcgcgacg
tacggggagggcgtgctggaggtcctggccgagacgtccccgggagcgtcctcggagaca
tccccggccccggcctccgcaccgcgcgaggctccggcctccgcccgtccgcaggtccag
gccgctccggctcccgcgtcgcgcccggccccggcccgtccgcagacgccggccgccccg
gcgcagcagtacggcgaccccgagttcgcctgggacgaggaaccgcccgagtacgagtga
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