Streptomyces violaceoruber: B1H20_21590
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Entry
B1H20_21590 CDS
T05124
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
svu
Streptomyces violaceoruber
Pathway
svu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B1H20_21590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svu03021
]
B1H20_21590
03400 DNA repair and recombination proteins [BR:
svu03400
]
B1H20_21590
Enzymes [BR:
svu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B1H20_21590
Transcription machinery [BR:
svu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B1H20_21590
DNA repair and recombination proteins [BR:
svu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B1H20_21590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Orbi_VP1
TarH
Motif
Other DBs
NCBI-ProteinID:
ARF63676
UniProt:
A0A1V0UEZ0
LinkDB
All DBs
Position
4901970..4905869
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQTENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGCMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDDEGRDVKGT
DRAFGSTAEATMAFDARELSLQAKVDIRFPVGTMPPRGWVPPVAEEGEPEYQPGDSFRLR
TSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLKIAVKG
ADGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAKGRVRIEETEKTKKIVVTPDDGSDETAFPISKRARL
LVGEGDPVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cggacctggtcgcacggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagcttgccgctccc
gtcacccacatctggtacttcaagggcgttccctcgcgcctcggctacctgctggacctc
gcgccgaaggacctggaaaaggtcatctacttcgccgcgtacatgatcacgttcgtggac
gaggagcgtcgtacccgcgacctgccgtccctggaggcccacgtctccgtcgagcgccag
cagaccgagaaccgccgcgacgccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgaaggc
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggagccgtttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctgcatgggcgccgccgcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacaagcccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggcaaccgtcccctgaag
tccctgagcgacatgctcaagggcaagcagggccgcttccgtcagaacctcctcggcaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtggccgc
accgtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgacgagggtcgcgacgtcaagggcacg
gaccgcgcgttcggctccacggccgaggccaccatggccttcgacgcccgcgagctgtcg
ctccaggcgaaggtcgacatccgcttcccggtcggcaccatgccgccccggggctgggtg
ccgccggtcgccgaggagggcgagccggagtaccagcccggcgactccttccggctgcgg
accagcctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttccactgggcgacc
cgttcgggcgtcaccgtggccatctccgacgtcgtcgtgcccgaggccaagaaggccatc
gtcaagggctacgaggagcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgagaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctcacc
gttctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgaccgcggcctgaagctgaagatcgcggtcaagggc
gccgacggcgtgctccgcaagacggacgacgtcgagacgtcggtctacgcccgcatgctc
gccgaggacgtcgtggtggacggcaaggtcatcgcgcctgccaacgtcgacctcggtgac
gtcctgatcgacgccctggtgggcgccggcgtcgaggaggtcaagacccgctcggttctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggacgctcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggcccgtacgccgaagggtgtcgccccg
atctccgaggccaagggccgcgtgcggatcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgcgcccgtctg
ctcgtgggcgagggcgacccggtcgaggtgggccagaagctcaccgtcggtgcgaccaac
ccgcacgacgtgctgcgcatcctcggccagcgcgccgtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgcgtgacgatcatcgagtccggcgacgcggagctgcttccg
ggcgagctggtcgagcggtcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctcgccacc
gagtcgtggctgtcggcggcgtccttccaggagacgaccagggttctcaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggccgtcccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
