Streptomyces violaceoruber: B1H20_25150
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Entry
B1H20_25150 CDS
T05124
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
svu
Streptomyces violaceoruber
Pathway
svu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H20_25150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svu03021
]
B1H20_25150
03019 Messenger RNA biogenesis [BR:
svu03019
]
B1H20_25150
Transcription machinery [BR:
svu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B1H20_25150
Messenger RNA biogenesis [BR:
svu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B1H20_25150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARF64300
UniProt:
A0A1V0UGV4
LinkDB
All DBs
Position
5726353..5728368
Genome browser
AA seq
671 aa
AA seq
DB search
MSDTTDLMGVTADKNVDSAAPAEGAASGTTARRRRSGTGLDGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGSAAPKAADAPADAESKPKRRATSKARTGEEAPAAEKDAGS
QQQIDIPGQPASDDQPAGERRRRRATAQAGSPDTKTEAKTEVKAKAEPQAEQKTEERAEP
KGDAKAEAAADTAEGRRGDRQGRDRGDREGRRERQRDRRGKGDDQGGQQGGGGGGGQRQQ
RQGQQNNRDNGPQDDFDDEAGGRRGRRGRYRDRRGRRGRDDFAGDVQVADDDVLIPVAGI
LDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDGERREKFNALV
RLDSVNGMAPESGRGRPEFQKLTPLYPQDRLRLETDSNVLTTRIIDLVAPIGKGQRGLIV
APPKTGKTMILQSIANAITVNSPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAE
DHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPP
KRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDRKLSDKRIFPA
VDVDASSTRKEEILLGTDELAVVWKLRRVLHALDQQQAIELLLDRMKKTQSNAEFLLQIQ
KTTPGSGNGND
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacaagaacgtcgacagcgccgcg
cccgccgaaggtgctgcctctggcaccaccgcacggcgccgccgctccggcaccggcctc
gacggcatggtcctggccgagctgcagcaggtcgcgtccggcctcggcatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcgggcggcgga
tccgccgcccccaaggctgccgacgcccccgccgacgcggagtccaagcccaagcgccgc
gcgacctcgaaggcgcgcaccggggaagaggcgcccgccgccgagaaggacgcgggcagc
cagcagcagatcgacatccccggccagccggccagcgacgaccagcccgcgggcgagcgc
cgtcgccgccgcgcgacggcccaggcgggcagccccgacaccaagaccgaggcgaagacc
gaggtcaaggcgaaggcggagccccaggccgagcagaagaccgaggagcgcgccgagccg
aagggcgacgccaaggccgaagccgccgccgacacggccgagggccgtcgcggcgaccgc
cagggccgcgaccgcggtgaccgcgagggccgccgggagcgccagcgcgaccgtcgcggc
aagggcgacgaccagggcggccagcagggcggcggcggtggcggcggacagcgccagcag
cgccagggccagcagaacaaccgggacaacggcccgcaggacgacttcgacgacgaggcg
ggcggccgtcgcggccgtcgcggccgctaccgcgaccgccggggccgtcgcgggcgcgac
gacttcgccggcgacgtgcaggtggccgacgacgacgtcctgatccccgtcgcgggcatc
ctggacatcctcgacaactacgcgttcatccggacctccggctacctgccgggcccgaac
gacgtgtacgtctcgctcgcccaggtccgcaagaacggcctgcgcaagggcgaccacgtc
accggcgcggtgcgccagcccaaggacggcgagcggcgcgagaagttcaacgcgctggtc
cgcctcgactcggtcaacggcatggcccccgagtccggccgcggccgccccgagttccag
aagctgaccccgctctacccgcaggaccggctccgcctggagaccgactccaacgtcctg
accacccggatcatcgacctggtcgccccgatcggcaagggccagcgcgggctcatcgtg
gccccgccgaagaccggcaagacgatgatcctgcagtcgatcgccaacgcgatcacggtc
aacagccccgagtgccacctgatggtcgtcctcgtcgacgagcgtccggaagaggtcacc
gacatgcagcggtcggtgaagggcgaggtcatctcctcgaccttcgaccgtcccgccgag
gaccacaccaccgtcgccgagctggccatcgagcgcgccaagcgcctcgtcgagctgggt
cacgacgtggtcgtcctgctcgactcgatcacccgcctgggccgcgcgtacaacctcgcg
gcgccggcctccggccgcatcctctccggtggtgtcgactcgaccgcgctctacccgccg
aagcgcttcttcggcgccgcgcgcaacatcgaggacggcggctcgctgaccatcctggcc
accgcgctcgtcgagaccggctcgcgcatggacgaggtgatcttcgaggagttcaagggc
accggcaacatggagctcaagctcgaccggaagctctcggacaagcgcatcttcccggcg
gtggacgtcgacgcgtcctccacccgcaaggaggagatcctgctcggcaccgacgaactg
gcggtcgtgtggaagctgcgccgggtgctgcacgcgctcgaccagcagcaggcgatcgag
ctcctcctggaccggatgaagaagacccagtccaacgctgagttcctgctccagatccag
aagacgacgccgggcagcggcaacggcaacgactga
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integrated database retrieval system
