Sciurus vulgaris (Eurasian red squirrel): 306649942
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Entry
306649942 CDS
T11892
Symbol
ATXN2L, ACX6B4_012374
Name
(RefSeq) ataxin-2-like protein isoform 1
KO
K23625
ataxin-2
Organism
svul Sciurus vulgaris (Eurasian red squirrel)
Pathway
svul05014
Amyotrophic lateral sclerosis
svul05017
Spinocerebellar ataxia
svul05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
svul00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
306649942 (ATXN2L)
05017 Spinocerebellar ataxia
306649942 (ATXN2L)
05022 Pathways of neurodegeneration - multiple diseases
306649942 (ATXN2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svul03019
]
306649942 (ATXN2L)
Messenger RNA biogenesis [BR:
svul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
306649942 (ATXN2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM14
DUF5415
Motif
Other DBs
NCBI-GeneID:
306649942
NCBI-ProteinID:
XP_078977586
LinkDB
All DBs
Position
18:complement(21364439..21376999)
Genome browser
AA seq
1105 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLAPAAAPPGPPAAASPCLG
PPATAGSGLRRGAESILAPQPPPPQQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYN
NSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKATEPAGGPRREDI
VDTMVFKPSDVMLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSD
DYDLESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQL
AREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREG
PRGGVRCSSSRGGRPGPSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGA
KTLSSPNSRPSGEASVPPPPAALPFLPVGRMYPPRSPKSAAPAPISASCPEPPIGSAVAT
SSASIPVTSSVADTGVGSISPASPKISLAPTDVKDLPTKEPGRTLEPQELARIAGKVPGL
QNEQKRFQLEELRKFGAQFKLQPSSSPETSLDPFPPRILKEEVKGKEKEVDGLLTSEPMG
SPVSSKTESVSDKEDKPPLAPAGSTEGPEQPPPPCPNQTGSPPVGLIKGDDKDEGPVAEQ
VKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISY
IPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAA
AGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSSPRMLTSGSHPQA
IVSSSTPQYPSAEQPTPQALYATVHQSYPHHATPLHAHQPQPATTPTGSQPQSQHAAPSP
VQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQ
LPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPA
LSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCFPPS
SLSCDPAAPLPTASPALSDPDCLLT
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccagccccagcagccgccccccacgcaa
caggccgtggctcgccggcctcccggcggcaccagtcctcccaacggcggcctcccgggg
ccactggcccccgccgctgctcccccaggacctcccgcggctgcctctccctgcctgggg
cctccggctactgccggcagcgggctccgccggggagccgaaagcatcctggcgccgcaa
ccgccgccgccgcagcagcaacatcaagagaggccaggggcagccgccatcggcagcgcc
aggggacagagcacaggaaaaggacccccacagtcacctgtgtttgaaggtgtttataac
aactccaggatgctgcatttcctgacagctgttgtgggctccacttgtgacgtaaaggtg
aaaaatggcaccacctatgaaggcattttcaaaactttgagctcaaagtttgaactggcg
gtagacgctgtgcaccggaaagcaactgagccagcaggtggtcctcgtcgagaagacatt
gtagacaccatggtgtttaaaccgagtgatgtcatgcttgtccatttccgaaatgttgac
ttcaattatgctactaaagacaagttcactgactcagccattgccatgaactcgaaggtg
aatggggagcacaaagagaaagtgcttcagcgctgggagggcggtgacagcaacagtgat
gattatgacctcgagtctgacatgtccaatggatgggaccccaatgaaatgttcaagttc
aatgaggagaattacggcgtgaagaccacctatgatagtagtctctcttcttacacggta
cccttagaaaaggacaactccgaagagttccgtcagcgggagctgcgcgcagcccagttg
gctcgggagattgagtcaagcccccagtatcgcctgcgaattgccatggagaatgacgac
gggcgcactgaggaggagaagcacagtgcagtccagcggcaggggtcagggcgagagagc
cccagcttggcatccagggaggggaagtatatccctctgcctcaacgtgttcgagaaggt
ccccggggaggagttcggtgcagcagttctcggggtggccggcctggccctagctctttg
ccacctcgtggccctcatcatcttgacaatagtagccctggcccaggttctgaggcacgt
ggtattaatggaggtccttcccgcatgtcacccaaggcacagcgtcctctgagaggtgcc
aagactctgtcttcacccaatagcaggccttctggagaagcttctgttccacctcctcct
gcagctctcccttttcttccagtgggccggatgtaccctccgcgctctcccaagtctgct
gcccctgccccaatctctgcttcctgtcctgagcctcctattggctctgcagtagcaacc
tcttcagcctctatccctgtgacatcatcagttgcggatactggagtgggctccatctcc
ccagcttctccaaagatctcactggcccctactgatgtaaaagacctcccaaccaaggaa
cctggcagaactctggagcctcaagagctggcccggatagctgggaaagtccctggcctt
cagaatgagcagaaacgatttcaactggaagaactgagaaagtttggggcccagtttaag
cttcagcctagtagctcccctgagaccagcctggatccttttcctcctcgaattttaaag
gaggaggtcaaagggaaggagaaggaagttgatggtctattgacgtcagaacccatgggg
tccccagtctcgtctaagacagaatccgtatcggataaggaggacaaaccacccctggca
cctgcaggaagcacggaggggccggagcaacccccacctccttgcccaaaccaaactggc
agccccccggtggggctcatcaagggagatgacaaggatgagggccctgttgctgaacaa
gtaaagaaatcaacgttgaaccccaatgccaaggaatttaatcccacgaagcctctgctg
tctgtgaacaaatccacaagtaccccaacttctccagggccccgaactcattcaaccccc
tccatcccggtgctgacagcaggccagagtggactgtacagcccccagtacatctcctac
atacctcagatccacatgggaccagctgtgcaggcacctcagatgtatccatatcctgta
tccaattcggtgcctgggcagcagggcaagtaccgaggagcaaaaggctccctcccaccc
cagcgctcagaccaacaccagccagcctcagcccctccgatgatgcaggctgctgcagct
gctggcccacccctggtggctgccacaccttactcttcctacatcccctacaacccgcag
cagttcccaggccagcctgccatgatgcagcctatggcccactacccctcacagccggtg
tttgcccccatgcttcaaagcagcccacgcatgctgacgtcgggtagccatccccaggcc
attgtgtcatcctccactcctcagtacccttctgcagagcagcccactccccaagccctc
tatgccactgttcaccagtcctatccacaccatgccacgccgctccacgcccaccagcca
cagccggccaccacacctactgggagccagccgcagtcacagcatgcggcccccagtccc
gtccagcaccaggcggggcaggccccacacctgggcagtggacagccacagcagaatctg
taccacccaggggccctgacaggcacgccgccctctctgccaccgggaccttctgcccag
tcccctcagagcagcttcccccagccagccgctgtgtatgccatccatccccaccagcag
ctgccccacggcttcaccaatatggcccatgttacccaggcccatgtccaaactggaatc
acagcagccccgccccctcaccctggggctccccacccgccccaggtgatgctgctgcac
ccaccccagagccatggggggcccccccaaggcgcggtgccccagagtggggtgcctgca
ctctcagcttccacaccctcaccctacccctacatcggacacccccaaggtgagcagcct
ggccaggcgcctggatttccaggaggagccgatgacaggattctatgtagggtgggcaga
agccacagtcgccgccgccaggggcttgctcctggctctgtcctttgcttccctccgtcc
tcgctcagttgtgatccagcagcccccctccccactgcctccccagctctcagtgacccc
gactgtctcctgacttag
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