Sciurus vulgaris (Eurasian red squirrel): 306657354
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Entry
306657354 CDS
T11892
Symbol
PRPF40A, ACX6B4_019786
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 1
KO
K12821
pre-mRNA-processing factor 40
Organism
svul Sciurus vulgaris (Eurasian red squirrel)
Pathway
svul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
306657354 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svul03041
]
306657354 (PRPF40A)
Spliceosome [BR:
svul03041
]
Complex A
U1 snRNP components
U1 related factors
306657354 (PRPF40A)
Complex B
306657354 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
306657354
NCBI-ProteinID:
XP_078989402
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All DBs
Position
3:complement(107700919..107753468)
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AA seq
1039 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVSAAHSDWTVGKPVSLLAPLIPPRSSGQPLTFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTTSGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGGLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANASSSTSTTNTVGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQL
TNTSAIQDLSVEVSSNTGEETSKQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKE
LLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKE
AKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQ
AKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFE
EHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISS
DIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFED
FVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAA
PPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKS
KKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKK
RRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELS
EGELEKRRRTLLEQLDDDQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggctgaggctgggggcgaatcaccgcagagctgcgtgtcg
gcagcgcactctgattggacagtggggaagcctgtcagcttattggccccactgatcccg
ccccgcagctcagggcagcctttaacctttggccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggacgggagccgaacgtggaggcctcatggtgagtgaaatggagagccatcct
ccctcgcggggtcccggggacggggagcggagattgtccggctcaagcctgtgctccagc
tcatgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggcatg
cattatgcaccaatgggaatgcaccctatgggtcagagagcgaatatgcctcctgtacct
catggaatgatgccacaaatgatgcctcctatgggggggccaccaatgggacaaatgcct
ggaatgatgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatg
caacctgccttaccgccaggagtaaatagtatggatgtagctgcaggcacaacatctggc
gcaaaatcaatgtggactgaacataaatcccctgatggaaggacttactactataatact
gaaacaaaacagtctacgtgggagaaaccagacgatcttaaaacacctgctgagcaattg
ttatctaaatgcccctggaaggaatacaaatctgattctggaaaaccttactattataat
tctcaaacaaaagaatcccgctgggcaaaacctaaagaacttgaggatcttgaaggatac
cagaataccattgttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaa
gctgaagaaagcagcaagcaagaagagtgcaccacaacatcagcagccccagttcctaca
acagaaattcccactacaatgagcaccatggctgctgcagaagctgcagcggctgttgtt
gcagcagcagctgcagctgcagcagctgctgctgcagccaatgccagttcttccacttct
actactaatactgtcggaactgttccagttgttcctgagcctgaagttacttccattgtt
gctactgttgtagataatgaaaatacagtaactatatcaactgaggaacaagcacaactt
actaatacctctgctattcaagatctgagtgttgaagtatccagtaatactggagaagaa
acatctaagcaggaaacggtaactgattttactcccaaaaaagaggaggaagagagccaa
ccagcaaaaaaaacatatacttggaatacaaaagaagaagcaaagcaagcatttaaagaa
ttattgaaagaaaagcgggtaccatccaatgcttcatgggagcaagctatgaaaatgatc
attaatgatcctcgatatagtgcattagcaaagttgagtgagaaaaagcaggcctttaat
gcctataaagtccagacagagaaagaggaaaaagaagaagcaagatcaaaatacaaagag
gctaaggaatccttccagcgttttcttgaaaatcacgagaaaatgacttccacaaccaga
tataaaaaggcagagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgt
gatcgtcttgaaatctacgaagatgttttgttctttctgtcaaaaaaagaaaaggaacaa
gcaaagcagttgcgaaaaagaaattgggaagccttaaaaaacatacttgacaacatggct
aatgtaacatactctacgacttggtctgaagctcagcagtacctaatggataatccaact
tttgcagaagatgaggagttacagaacatggacaaagaagatgcattaatttgctttgaa
gagcatattcgggctctagaaaaggaagaagaagaagaaaaacagaagagtttgctgaga
gaaaggagacgacagcgtaaaaatagggaatcttttcagatatttttagatgaattgcat
gaacatggacaacttcattctatgtcatcttggatggaattgtatccaactattagttct
gacattcgattcactaatatgcttggtcagcctgttttttcattaggatcaactgcactt
gatcttttcaagttttatgttgaggatcttaaagcacgttatcatgatgaaaaaaaaata
ataaaagacattctaaaggataaaggatttgtagttgaagtaaatactacttttgaagac
tttgtggcaataattagttcaactaaaagatcaactacattagatgccggaaatatcaag
ttggctttcaatagtttactagaaaaggcagaagcccgtgagcgtgaaagagaaaaagag
gaggcccggaagatgaaacgaaaagaatctgcatttaagagcatgctaaagcaagctgct
cctccaatagagttggatgctgtctgggaagatatccgtgagagatttgtaaaagagcca
gcatttgaggacattactctagagtctgaaaggaaaagaatatttaaagatttcatgcac
gtgcttgagcatgaatgtcaacaccatcattcaaagaacaaaaaacattctaagaagtct
aaaaaacatcatagaaaacgttcccgctcccgatcgggatcagattcagatgatgatgac
agtcattcaaagaaaaaaagacagcgatcagagtcccgttctgcttcagaacattcttct
agtgctgagtctgagagaagttataagaaatcaaaaaagcataagaagaaaagcaagaag
aggagacataaatctgactctccagaatcagatgctgagcgagagaaggataaaaaagaa
aaagatcgggaaagtgaaaaagatagaactagacaaagatcagaatcaaaacacaaatca
cctaagaaaaagactggaaaggattctggtaactgggatacttctggcagtgaactgagt
gaaggagaattagaaaagcgcagaagaacccttttggagcaactggatgatgatcaataa
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