Sciurus vulgaris (Eurasian red squirrel): 306664881
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Entry
306664881 CDS
T11892
Symbol
SKIC3, ACX6B4_027313
Name
(RefSeq) superkiller complex protein 3 isoform 1
KO
K12600
superkiller protein 3
Organism
svul Sciurus vulgaris (Eurasian red squirrel)
Pathway
svul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306664881 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svul03019
]
306664881 (SKIC3)
Messenger RNA biogenesis [BR:
svul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
306664881 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_8
TPR_14
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_11
CFAP70_TPR_C
CFAP70_mid_TPR
ANAPC3
TPR_9
ARM_TT21_C
TPR_INTS8_3
TTC22_N
Fis1_TPR_C
Sel1
ARM_TT21_2nd
TPR_5
TPR_15
ARM_TT21_5th
CABIN1_N
Retrotran_gag_2
VPS18_solenoid_1st
SNAP
TPR_30
Sey1_3HB
BTAD
DUF7017
DUF6596
TPR_20
TPR_6
Motif
Other DBs
NCBI-GeneID:
306664881
NCBI-ProteinID:
XP_079002130
LinkDB
All DBs
Position
6:91065641..91166654
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPNQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVGRTWHRLIKTRQEEGADNQELHQLWRKLTQLLAESMEDQNNETQQ
LLLTAFENALGLSDKIPSEDHQVLYRHFIQCLSKFPHETARLKKACEGMINIYPTIQYPL
EVLCLHLIESGNLTDEGQQYCCKLVEMNSKSGPGLIGLGIRALQDKKYEDAVKNLTEGLK
ESPLCTTGWYHLSEAQIKMHRLKEAVFACNQALKNIDNLGVSGSSLYQKNLCLRLKAEAL
IKLSDYESSEEAICSLDQVSDANNIPGLLVLKSLAYLNKGLLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALERDAEVAEYHYQLGVTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYKDVVGDKNRARGCYRKAFELDDTDVESGAAAVDLSVE
LEDMEAALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAIAQYQLIIK
KKEDYVPALKGLGECYLMMARAALVDYLDGKAVDYIEKALEYFTWALQHRADVSCLWKLV
GDACTSLYAVSSSKVNVNILGILLGQKEGKQVLKKTELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAEMGSSMNDLKELLDKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAMLLLQTEEDQDTYN
DTVRNYGRLLCSIGEYDKAIQAFKSIPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTALAITEYKQGKMDVAKSLLFKCSILKEPTIESLQALCALGLVMQDATL
SKAALNELLKHIKHKDSDYHRCLLTSAIYALQGRSVAVQRQASKAVHSNPADPALWSFLS
RVVAQCAQRNAKGGAVAGTVAHILDSDHGKKALLYTAANQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAVWAGLMAACYADDKLALVNNTQPKRMDLYLALLSAVSASIKGKEFLEKY
NQSLEQWSLSQAVTGLIETGRISEAEALCTKNLKSNPDQPAIILLLRQVQCKSLLESQKP
LPDAVLDELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEICMANVSSDHWPSLVQEATTEALKLCFCPLAILLQALLQFHRKMGARE
TRRLLERVVYQPGYPKSIVSAARWYLLRHLYAKNDYELIDVLVNNAETHRDTRALELNQK
LSSE
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacactgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgctgcagagctagaacaacctgatcaggctcaa
ggtgcctataagaaagctgctgaactagaaccaaaccagttactagcttggcaggggtta
gcaagcttgtatgagaagtgtaatcacataaatgctaaggatgacttgccgggtgtttac
cagaaactcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctctattaccaagaaaagaaacacctagaggtgggtcgaacatggcac
agattgataaagacacgacaagaagaaggtgcagacaaccaggagcttcatcagctatgg
aggaagttgactcagttgctggctgagagtatggaggatcagaataatgaaactcagcaa
ctgcttttaactgcatttgagaatgctctgggcttgtcagataagattcctagtgaagat
caccaagtactgtataggcatttcattcagtgtttatccaaatttccacatgagactgct
aggttgaagaaggcctgtgaaggaatgataaacatctaccccaccatacagtatccatta
gaagtgctttgtttacatttaattgaatcaggaaatcttactgatgagggacagcagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggcctcattggcttaggcatt
agagcattacaagacaaaaagtatgaagatgctgttaagaatctaacagaagggctaaag
gaaagccctctctgcacaactggatggtatcatctgtctgaagctcaaatcaaaatgcat
agacttaaggaagctgtttttgcatgcaatcaagctctgaagaacatagataatcttggt
gtgtctggaagcagtctttatcagaagaacctttgtcttcgtttgaaagcagaagctttg
attaaactctcagattatgaatcttcagaggaagcaatttgttctctggatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaagcttggcttatctgaacaaaggt
ttactagatgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggcattgattcattttacaaaaaaggactatctgcaagcagaa
aaatgttttcagagagcacttgaaagagatgctgaagttgctgaatatcattaccagctt
ggggtaacatattggttcatgggtgaggaaaccagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatacatgggcaaagttttctgctatttagga
cattattacaaagatgtagtgggagataaaaaccgagctcgtggatgttacagaaaagct
tttgagttagatgacactgatgtggaatctggagctgcagcagttgacttaagtgtggag
cttgaagatatggaagctgccttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacggcaaaatgggcctggcttcggcgaggactatactatttgaaagctggtcaacat
tcacaagcagtggctgacttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatacttaagcagaggtggctatacaacagccttgaagtcc
ttcacaaaagccagtgagctcaacccagagtccacatacagtgtgtttaaggttgcagca
atacaacaaatcctaggcaagtataaggaggccatagctcaataccagctgattattaaa
aagaaagaagattatgtacctgctttgaaaggtttgggcgaatgctatctcatgatggca
agagcggctctagtcgattatcttgatggaaaagctgtagactacatagaaaaagccctg
gaatattttacttgggccctgcagcatcgagctgatgtgtcctgcctttggaagctggtt
ggtgatgcttgtactagtctgtatgcagtttcatcttctaaagtgaatgttaatatttta
gggattcttctaggtcagaaagaaggaaaacaagtattaaagaaaactgagcttctccat
cttggaggaaggtgttacggtcgtgcattaaaactgatgtctacgtctaatacatggtgt
gatcttggaattaattattaccgccaagcacaacatctagcagaaatgggcagcagcatg
aatgatcttaaagagttgctagacaaatctttacattgtctgaaaaaggcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtagttgcgtgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcgtggaccaatttgggagtgttatatcttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcagtcccttgatccatcttatttaatgtgctggattgga
caagctcttattgcagagacagttggaagttatgacaccatggatcttttcaggcacact
acagaactcagtatgcatactgagggagcactaggttatgcatactgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaacatcctccagatgaat
gctattccagcagcgcaagttgttttgtgtaaatatgtggaaagaattcagaattatgct
ccagctttcacaatgttgggttatttaaatgaacatctacagctgaaaaaggaagcagca
gatgcatatcaaagggcaatgttgttgttgcaaactgaagaagatcaagatacttataat
gatacagtaagaaattatggcagactgttgtgttccattggtgaatatgacaaagctatc
caggcttttaagtcaatacctcttgaggagttagaagacatcataggctttgcattggct
ttatttatgaaggggctatataaagagagcagcaaagcctatgaaagagccttgtctatt
gttgaatcagagcaagacaaagcccatatcttgacagctctggcaataacagaatataaa
caaggaaaaatggatgtagccaagtcactgctattcaaatgctctattttaaaggaacca
accatagaaagccttcaagccctgtgtgctctaggattggtaatgcaggatgctacgctg
tcaaaagcagcacttaatgagttactgaagcacatcaaacacaaagacagtgattatcac
aggtgccttcttacttcagcgatttatgcactccaaggccgcagtgtagcagtgcaacgg
caagcatctaaagctgttcacagtaacccggctgatcctgctctttggtctttcttatcc
cgggttgttgctcagtgtgctcaacgaaatgcaaagggaggtgctgtagcaggaactgtg
gctcatattctggactcagatcatggaaagaaggcattactgtacactgcagcaaatcag
ttggcaatggggagcagttcagcagaagatgaaaaaaatattgcactaaagactattcag
aaggcagctctcctttctccaggtgaccctgctgtctgggctgggctgatggcagcctgt
tatgctgatgataaactggctctagtgaacaacactcagccaaagaggatggatttatac
ttggcactgttatctgctgtttctgcttcaattaagggcaaggaatttcttgaaaagtac
aaccaatctcttgaacagtggtctctctcacaagctgtcactggtctgatagaaacagga
agaatatctgaagctgaagctctctgcacaaagaatttaaaaagtaaccccgatcagcca
gctattatattacttttgagacaagttcagtgtaaatcactcctggagtcacaaaagcca
ctcccagatgcagtactcgatgaacttcaaaaaacagttatgtctaactcaacttctgtt
ccagcttggcagtggttggcacaggtgtaccagtctcaaggaatgatgggtgctgcagaa
atgtgttacagaaagagtctacaagtggcatcccagcagggaagttggagtgggaagctc
tcaagtctattgaaactagcattgctcgccttagaaatctgtatggcaaatgtttccagt
gatcactggccatctttggttcaagaggctacaactgaggccttaaaactttgtttctgt
ccactagctattcttttacaagctttgttacaattccaccgcaaaatgggagcaagagag
acacggcgacttttggagagagtagtatatcaaccaggatatccaaaatctattgtatca
gctgctcgttggtacctactgagacacctctatgccaaaaatgactatgagcttattgat
gtattggtaaacaatgctgaaactcacagagatacaagagcattggaactgaatcagaaa
ttgtcctcagagtaa
DBGET
integrated database retrieval system
