Sciurus vulgaris (Eurasian red squirrel): 306666022
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Entry
306666022 CDS
T11892
Symbol
COL11A2, ACX6B4_028454
Name
(RefSeq) collagen alpha-2(XI) chain isoform 1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
svul Sciurus vulgaris (Eurasian red squirrel)
Pathway
svul04820
Cytoskeleton in muscle cells
svul04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
svul00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
306666022 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
306666022 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
svul00536
]
306666022 (COL11A2)
Glycosaminoglycan binding proteins [BR:
svul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
306666022 (COL11A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
306666022
NCBI-ProteinID:
XP_079003937
LinkDB
All DBs
Position
7:123775186..123804388
Genome browser
AA seq
1736 aa
AA seq
DB search
MERCSRCHRLLLLLPLVLGLGTAPGWAGAPSVDVLRALRFPSLPDGVRRARGICPAHVAY
RVSRPDQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAH
PVLDTRGVVIFGARILDEEVFEGDVQELVIVPGVQAAYQFCEQKDLECEGSQRERPQNQQ
SHRTQRSPKQQPSRLHRPQNQEPQRQPTESLYYDYEPPYYDVTTTGTTPDYQDPAPGEEE
EVLESSPLSLPEEEQTDLQVPPTADRFLAEEYGEGGTDAPAGLYDYTYGYGDDYREETEL
GPALSAETAHSGAAALGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLAGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGDRGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAVGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPI
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGAVGQQGRP
GTTGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGGRLMQEDEGMQTGGARDSPGGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSREGPLRLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPARRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgcctcctcctgctcctacctctggtgctgggactc
ggcactgccccgggctgggcaggtgcaccctctgtggatgtgctccgggctctgaggttt
ccctccctccctgatggtgtccggagggcaagaggcatctgtccagctcatgtggcctac
cgagtgtcaagacctgaccagctcagtgcacccacccgccagcttttcccaggaggtttt
cccaaagatttctctctgctgactgttgtccggacccgtcctggcctccaggctcccctc
ctgactctctatagtgcccagggtgtacaacagctgggcctggagcttggccgacctgtt
cgctttctatatgaagaccagactggacggcctcaaccccctgcccagccggtcttccga
ggcctcagcctagccgatggcaagtggcaccgtgtggctgtggctgtgaaaggccagtct
gtcaccctcatcgttgactgcaagaagcgagtcacccggccccttccccgaagtgctcat
cctgtgttggacacccgtggagtggtgatctttggtgcccgcatcctggatgaagaggtc
tttgagggtgatgtccaggagcttgtcattgttccaggagtccaagctgcctaccaattc
tgtgaacagaaggatctggaatgcgaggggagccagagggagagacctcagaaccaacag
tctcacagaacccagagatctccaaagcagcaaccatcaagacttcacaggccacaaaac
caggaaccccagcgacagcccactgagtctctctactatgactacgagcccccctattac
gatgtgacgactacggggacgacccctgattatcaggaccccgccccaggtgaagaggaa
gaagtcctggagtccagccccttgtcactcccagaggaggagcagacagatctccaggtc
ccccccacagctgacaggttcctggcagaggagtatggggagggtggcacagacgcccca
gcagggctctacgattacacctatggctatggggacgattatcgtgaggagacggagctt
ggccctgccctctctgcggagacagcccactcaggagccgctgcccttggacctcggggg
ctgaagggagagaagggtgagcctgcagtactggaacctggtatgcttgtggaggggccc
cctggcccagaaggtcctgcgggattggctggtcctcctggcatccaggggaacccaggc
ccagttggagaccctggcgagaggggccctcctggccgagcaggactccctggatccgat
ggggcccctggccctcctggcacatccctcatgctcccattccggtttgggagtggtggg
ggtgacaagggacctgtggtggcagcccaggaggctcaggcccaggcgattctgcagcag
gcacggctggcactccgtggaccccctggccccatgggatacacaggccgtcctggaccc
ttgggacagcctgggagtcctggcctgaaaggagaatctggagacctaggacctcagggc
cccagaggacctcagggtctcacaggccctcctggcaaggctgggcgaaggggacgagca
ggtgctgatggagcccgaggcatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccaggactacctggagagaaaggccataggggtgatactggtgcccagggc
cttcctgggccccctggtgaggatggagatcggggagatgatggggagattggacctcgg
gggctacctggagagtcgggacctcgaggacttcttggtcccaaaggcccacctggtatt
cctgggcccccgggagtccgaggcatggatggtccccatggccccaaagggagcttggga
ccccagggagagccaggacctcctggacaacagggaactcctgggacccagggtcttcct
gggcctcagggtgcagttggtcctcatggagagaagggtcctcgagggaaaccagggctc
cctggcatgcctggctcagatggacccccgggtcaccctgggaaggaaggtccccctgga
actaaaggaaaccagggtccatctggacctcagggtcctctaggttacccaggacctcga
ggtgtcaagggcgtggatggaattcggggtctgaagggtcataagggtgaaaagggtgag
gacggctttcctgggttcaaaggtgacataggtgtgaaaggtgacaggggcgaggttgga
gtccctggttccaggggagaagatggccctgaagggccgaagggccgcactggacctatt
ggagaccctggtccccctgggctcatgggcgaaaagggcaagctgggtgttcctggtctg
cctggctatcctggacgtcagggtcccaaggggtctctgggatttcctggttttcctgga
gccagcggagagaagggagcccggggcctgtctggaaaatcagggcctcggggagaacgg
ggccccacgggtccgcggggtcagcgggggccccgaggtgccactgggaaatctggagct
aagggaacatcaggtggtgatggcccccatggcccccctggagagaggggtctccctgga
cctcagggcccaaatgggtttcctggccccaaaggccccccgggcccccctgggaaagat
gggctgccgggacatccaggccagagaggagaagtgggtttccaagggaagacgggacca
cctggccctcctggagtagtaggacctcagggagcagcaggagaaagtggccccatgggt
gagaggggtcacccaggccccccagggcctcctggagagcagggtctgcctggcacagct
ggaaaagaaggcacaaagggtgaccctggtccccctggagccccagggaaagatggtcct
gctggtctgaggggcttcccaggagagcgaggccttccgggcactgctggtggacctggt
ttgaaggggaatgaaggtccggctggccccccaggccctgcaggctcacctggggagcga
ggtgcagcaggatctgggggacccattggccccccagggcgtccaggtccacaaggtccc
cctggagcagcaggggagaaaggcgtcccgggggagaagggacccattggtcctactggc
cgtgatggggtgcagggtcctgtggggcttcctggtcctgctggacccccgggtgtggcc
ggagaggatggagacaagggtgaggtgggagacccaggacagaagggcaccaaagggaac
aagggcgaacacggccctcctggaccccctggacccattggtcctgtggggcagcctgga
gcagcgggagcagatggggagcctggagctcgggggccccagggacactttggagccaaa
ggtgatgaaggaacaagaggattcaatgggcccccaggacctattggcctacagggcttg
ccaggcccctctggggagaaaggagaaacaggagacgtgggtcctatgggaccacctggc
cccccaggacctcgaggcccagctggacccaatggtgctgatggcccacaaggtcccccg
ggaggtgttgggaacctgggcccccctggagagaagggggagccaggagagtcaggatct
ccaggggtccagggagagccaggtgtcaagggtccacgtggggaacgtggagagaaagga
gagtcggggcagccaggagaggcaggaccaccagggcctaaaggccccacaggcgatgat
ggccccaaagggaatcctggtcctgttggttttcctggtgaccctggcccccctggggaa
ggtggccctcggggccaggatggtgctaagggtgaccgaggagaagacggggagccagga
cagcctggatcccctggacccactggggagaatggaccccctggaccacttggaaagcgg
ggtcctgctggcacacctggtccagaggggcgacaaggagagaagggagccaagggggat
cctggtgctgtgggtgccccagggaagacaggtcctgtgggtcctgcaggcccagcagga
aagcctggccctgatggactgagggggctcccaggtgcagtgggtcagcaaggccgtcct
ggaaccacaggccaggctgggcccccaggccctgtgggacccccagggctacctggcctc
cgaggtgatgctggagccaagggagagaagggtcacccaggtctcattggactgatcggg
ccccctggagaacaaggagagaagggtgatcggggacttcctggccctcagggctcccct
ggacagaagggagagacgggcatcccaggagcatctggtcccattggtcctggaggaccc
cctggtctccctggtcctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcgtccagggtcctccaggacacccgggacctccgggtgaggtg
atccagccactgcccatccagatgcccaagaagactcgacgctcagtggatgggggccgc
ctaatgcaggaagacgagggcatgcaaactgggggtgcccgagacagtcctggggggctg
gaggagatctttggctcacttgactccctgagagaggagattgagcagatgaggcgacca
acagggacccaggacagccctgctcgcacctgccaggacctgaaactgtgccatcccgag
ctgcctgatggagagtactgggtggaccccaaccagggctgtgctcgggatgctttccgg
gttttctgcaactttacggcaggaggggagacatgtgtgacacccagggatgacgtcaca
cagttctcttatgtggactcagagggctccccggtaggtgtggtccagcttaccttcctg
cgcctgctcagtgtctcggcccaccaggacgtctcttacccatgctctggagtatcccgt
gaaggtcccctgaggctccggggggccaatgaggatgagctaagcccagagaccagcccc
tatgtcaaagaattcagagatggctgtcagacacagcaaggtcggactgtgctggaggtg
cgcacgcctgtgctggagcagctgccagtgctggatgcctccttctcagacctgggggcc
cccgcaaggcggggaggggtgctgctggggcctgtctgcttcatgggctag
DBGET
integrated database retrieval system
