Sciurus vulgaris (Eurasian red squirrel): 306666438
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Entry
306666438 CDS
T11892
Symbol
SKIC2, ACX6B4_028870
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
svul Sciurus vulgaris (Eurasian red squirrel)
Pathway
svul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306666438 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svul03019
]
306666438 (SKIC2)
Enzymes [BR:
svul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
306666438 (SKIC2)
Messenger RNA biogenesis [BR:
svul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
306666438 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
306666438 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
306666438
NCBI-ProteinID:
XP_079004669
LinkDB
All DBs
Position
7:complement(125041185..125051094)
Genome browser
AA seq
1246 aa
AA seq
DB search
MLETERLVLPPPDPLNLPLRTVELGCTGRWELLNVPGTPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLFALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPVPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGMNFAPKDHPALAPGLLSLSRLLEPLDLGGGDEDEVEAMGQSEGPGGD
SVSASPCSAPLARASSLEDLVLKEASTVISPQEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLTSLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETRNMIQQRIIESVNGLKSLS
AGRVVVVKNREHHNALGVILQVSSNSTSRIFTTLVLCDKPLSEDPQDKDPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFRKDPPLAV
VTTAVQELLRLAQAYPTGPPTLDPVNDLQLKDVLVVEGGLRARKLEELIRGAQCVHSPRF
SAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDQAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDTGDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttggagactgagcgacttgtgctgcctccccccgaccccctgaatctgccccttcgg
accgtggaactgggatgcacagggcgttgggagctgctgaacgtgcctgggactccagag
agcacccttccccatggccttcctccctgtgccccagatctgcagcaagaagcagaacag
ttgtttctgtcctcgccagcctggttgccactgcatggtgtggagcactcagctcgaaaa
tggcagaggaagacagatccctggtcacttctgtttgcgctgggggctccagttccatcc
gaccttcaggcccaaagacacccaacgacaggccagatactgggctataaggaggtcctg
ctggagaacacaaacctgtcagccacaacctccttgtctcttcgccggcctccagtgcca
gtctcccagtctctatgggggaatccaacacagtaccctttctggccaggtgggatggat
gaacctaccataacagatctgagcactcgtgaggaggctgaggaggagatagactttgag
aaagatcttctcactgttccacctggcttcaagaaaggcatgaactttgctcccaaggat
cacccagctctagctcctgggctgctcagcctcagccgtctactggagcctctagatttg
ggagggggtgatgaggacgaggttgaggcaatgggacagtcagagggtcccggaggagac
agtgtttcagcttctccctgcagtgctcccctggcccgggcaagcagcttggaggaccta
gtgttaaaggaagcatccacagtcatatccccccaagagcctcccaaacctctacctcag
gagcagtgggctattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccagccttccagtgggcgtttgagccagatgtgtttcagaaacaagccatcctg
cacttggaacagcatgactctgtctttgtagcagctcacacatctgcagggaagacagtt
gtggctgaatatgctattgctctggcccagaaacacatgactcgcaccatctacacttct
cctatcaaggccttgagcaaccagaaattccgggacttcagaaacacatttggggatgtg
ggactgctgactggggatgtgcagctgcacccagaggcctcctgcctcatcatgacgaca
gagatccttcgctccatgctgtacagtggctccgatgttattcgggatctggagtgggtc
atctttgatgaggttcactatattaatgatgcagagcgtggggtcgtgtgggaggaggtg
ctcatcatgctccccgaccatgtctccatcatccttctgagtgctactgtccctaatgcc
ctggagtttgctgactggattgggagactgaagcgtcgacagatctatgtgatcagcact
gttgcccgccctgtgccccttgagcactatctcttcacagggaatagccccaagacccag
ggggagctctttctgctgctggactctcgaggggccttccataccaaggggtactatgca
gccgtagaggccaagaaggagagaatgagcaaacatgcccagacctttggagccaagcag
cccacacaccagggggggcccgcacaggaccgcggggtatacctgtccctcctgacctcc
ctccgcacccgggcccagctgcctgtggtagtgttcaccttctcccggggccgttgtgat
gagcaggcctcaggtctcacctcacttgaccttaccacgagttcagagaagagtgagatt
cacctctttctgcagcgctgcctcgctcgtctcaggggctctgaccgccaactcccccag
gtcctgcacatgtctgaactcctgcaccgtggcctaggtgtacaccacagtggcatccta
cccattctcaaggagattgtggagatgctcttcagccgtggcctggtcaaggtcttgttt
gccacagagacctttgccatgggtgtaaacatgccagcacgtacagtggtatttgactcc
atgcgcaagcatgatggctccaccttccgggaccttctacctggagagtatgtacagatg
gctggccgggcaggccggaggggcttggaccccacaggcactgtcatccttctctgcaag
ggacgtgtgcctgagatggcagatctgcaccgcatgatgatggggaagccatcccagttg
cagtcccagttccgcctcacatacactatgatcctcaacctgcttcgggtagatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgtaaggatagcaag
gcccatgaacaggctctggctgaactaaccaagaggctgggtgccttggaggagcctgat
atgactggccaattggtggacctaccagagtattatagctggggggaggaactgacagag
acccggaacatgatccagcaacgtatcatagagtctgtgaatgggctgaaatctctctcg
gcaggaagggtggtggttgtgaagaaccgggagcatcacaatgcactgggtgtgatcctg
caggtctcctcaaactccaccagcagaatcttcacaaccctggtcttgtgtgataagcct
ttgtctgaggacccacaggacaaggatccagccactccagatgtgccctaccctgatgac
cttgtgggcttcaagctattcctgcctgaagggccctgtgaccatactgtggccaagctt
cagccaggagatgtggctgccatcaccaccaaggtgctccgggtgaatggtgagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaggaaggatcctccacttgcagtt
gtgaccactgctgtccaggaattgctgcgtctagctcaagcctacccaacaggacctccc
acccttgatcctgtcaatgacctgcagctcaaggatgtgttggtggtagagggtgggctt
cgggcccggaagctggaagagctgatccggggagcccagtgtgtacacagcccccgtttt
tctgcccagtacctgaagctgagggaacgaatgcagattcagaaggagatggagcggctg
cgcttcctactgtcagatcagtcactgctgctgctccctgagtaccaccagcgagtagag
gtactccgaaccctgggttacgtggaccaggcaggcaccgtgaagttggcagggcgggtg
gcttgtgccatgagcagccacgaattactcctcactgaactcatgtttgacaatgcactg
agtgccctgcggcccgaggagattgcagccctgctttctggcctggtctgtcagagtcct
ggggacactggggatcagcttccaagtacccttaagcagggagtagaacgtgtccgtgcc
gtggcaaagaggattggtgaggtccaggtggcctgtggtctgaaccagacagtggaggaa
tttgtgggggaactgaattttgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctccgagttggcagggctttcggggaccccggaaggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgcgaggggcagcccgcctggtaggggagcct
gtgctgggcgccaagatggagacagcagctaccctgttacgacgggatattgtctttgca
gctagcctttacacccagtga
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