Shewanella woodyi: Swoo_0060
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Entry
Swoo_0060 CDS
T00676
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03030
DNA replication
swd03410
Base excision repair
swd03420
Nucleotide excision repair
swd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Swoo_0060
03410 Base excision repair
Swoo_0060
03420 Nucleotide excision repair
Swoo_0060
03440 Homologous recombination
Swoo_0060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swd03032
]
Swoo_0060
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_0060
Enzymes [BR:
swd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Swoo_0060
DNA replication proteins [BR:
swd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Swoo_0060
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Swoo_0060
NER (nucleotide excision repair)
GGR (global genome repair) factors
Swoo_0060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACA84361
UniProt:
B1KD14
LinkDB
All DBs
Position
complement(72902..75739)
Genome browser
AA seq
945 aa
AA seq
DB search
MAENSLLWHASATIENRSRNQSRILIMPKIAENPLVLVDGSSYLYRAYYAPPHLTNSKGE
ATGAVYGVINMLRSLLNQYKPSQMAVVFDAKGKTFRNDMYEEYKAQRPPMPDDLRTQIEP
LHNIIRALGLPLVCIPGVEADDVIGTIATQASKEGRAVLISTGDKDMAQLVDDNVTLINT
MTNTIMGPEEVTEKFGVGPELIIDLLALQGDKADNIPGLPGVGEKTAVAMLTGAGSVEQI
LAAPEKIPALGFRGSKTMPAKLAEHGEMLKLSYELATIKLDVEMEQDWKELVIAPANKDD
LVKYYGEMEFKRWLAEVLDNKGSSAQSSDNSADEEEVVPQAIDAEYETILTHEALDKWIE
QLTKADLIAIDTETTSLDYMTAKLVGISFAVEVGKAAYLPLAHDYLDAPEQLDFDEAIAK
LKPLLEDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALK
YLGHKNISFEEIAGKGAKQLTFNQIDLETAAPYAAEDADITLRLHQHLWARLEKEPKLAS
VFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDKLEQDAFEIAGETFNLSSPK
QLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSLAKLKSTYTDKL
PLMVNAQSGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAA
DYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGL
IYGMSAFGLARQLDIPRGEAQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLY
LPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIASWIESETHGEITMIMQVHDE
LVFEVDSDKAEALKEQICKMMADAVSLDVELLAEGGIGDNWEQAH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaactcccttctatggcatgctagcgccactatcgaaaacagatctcgaaac
caaagccgaatacttattatgcctaaaattgctgaaaaccctttagttcttgtggatggt
tcttcatacctctaccgagcctattacgcaccaccacatctaacaaattcaaaaggggaa
gcgactggagcagtctatggcgtgatcaacatgctacgcagcttacttaatcaatataaa
ccaagtcagatggctgtggtattcgatgcaaaaggtaaaactttccgtaatgatatgtac
gaagagtacaaggcacagcgtccacctatgccagatgatcttcgcacccaaatagagcca
ctgcataatattattcgcgcattaggtttacctcttgtctgtattcccggcgtcgaagcc
gacgatgtgataggcacgattgcgacacaagccagcaaagagggacgcgccgtcctaatc
agcactggtgataaggatatggctcagctggtcgatgataatgtcacacttatcaacacc
atgaccaataccattatgggaccggaagaggtgactgaaaagtttggtgtagggcctgag
ttgattattgatctgctagcactgcagggcgataaggcagataacattccaggtcttcca
ggtgttggtgagaaaacagcagtggctatgctaacaggggcgggtagcgtcgagcagatc
ttagcggctccagaaaagataccggctttaggctttagaggttctaaaaccatgcctgcc
aaactcgccgaacatggtgagatgcttaagttatcctacgagttagcgaccattaaactc
gatgtagagatggagcaagactggaaagagttagtcattgcaccagcgaataaagatgat
ctggtgaaatactatggcgagatggaatttaagcgctggttagccgaagtcttagacaat
aaaggcagctcagctcaaagctcagataacagtgcagatgaagaggaggttgttccacag
gctatcgacgccgaatatgagacaattctgactcatgaagctttggacaaatggatcgaa
caactcaccaaagcagatctcattgctatcgacactgagaccaccagcctagattacatg
acagctaagcttgtggggatctcgtttgctgtagaggttggcaaagccgcttatctccca
ttagcacacgattacctcgatgctcctgagcaactggatttcgatgaggctatcgccaag
cttaagcctctacttgaagatcccaagcttaaaaaagtgggacaaaaccttaaatatgac
atcagcatctttgccaatgtcggcatcaagctacaaggtgttgccttcgataccatgctc
gagtcctacgtatttaactcggtagcttcaaagcacaatatggatgatctggcacttaaa
tacctaggtcataaaaatattagtttcgaagagatcgccgggaaaggcgctaagcagctc
acctttaatcagatcgatctcgaaacagctgccccttatgccgcagaagatgccgacatc
acccttagattacatcaacatctatgggcaagattagagaaagaaccaaagcttgcttca
gtatttactgatatcgaactgccactggttcaagtactctcaaagatcgaacgccaaggc
gtacttatcgacagcatgatgctaggtcagcaaagccaagagatcgctatctctatcgat
aagctagagcaagatgctttcgaaatagctggagaaaccttcaatctaagttcacctaag
cagttacaagcactctttttcgagaagcttggctacccagtgattaagaagacccccaag
ggagccccttcaaccgccgaagaggtgttggtcgagcttgctctagattacccattgcct
aagataatcttgcaacacagaagcttagcgaagcttaaaagcacttacactgacaagctt
cccctaatggttaatgctcaatctggccgagtacacaccagttatcaccaagctaatgcc
gcaacgggtcgtttatcttccagcgaacctaatctgcaaaatatcccgatccgaaccgaa
gagggacgccgcatacgccatgcctttattgctcaagagggtaaaaaagtgctggcagcc
gattactctcaaatcgagctacggatcatggctcatctgtcacaagacaagggcttactc
accgcttttgctgaaggtaaagatattcataaagccacggcagcagaggtatttggtgtt
gatttcagtgaggtcaccacagagcagcgccgccgtgctaaggccgttaacttcggctta
atctacggcatgtctgcatttggtcttgctaggcagcttgatattcctcgcggtgaagcg
caaaagtatatcgacacttacttcgatcgctacccaggtgtgctcaagtatatggaagac
accagagcagaagccgctgatcttggttacgtctcgactctttatggccgcagactctat
ctacctgcgattaaagacagaaacgccatgcgcagacaagccgccgagcgcgccgcaatt
aacgcgcctatgcaaggaacagccgctgatattattaagaaggcaatgatcaatattgct
agctggatcgaatctgagacccatggtgagatcactatgatcatgcaggtacacgatgaa
ttggtatttgaggtcgatagtgataaagctgaagcattaaaagagcagatatgtaagatg
atggccgatgcagttagcttagatgtcgaactactcgccgaaggcggaataggcgacaac
tgggagcaagctcactaa
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