Shewanella woodyi: Swoo_0487
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Entry
Swoo_0487 CDS
T00676
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
swd
Shewanella woodyi
Pathway
swd00300
Lysine biosynthesis
swd00470
D-Amino acid metabolism
swd01100
Metabolic pathways
swd01110
Biosynthesis of secondary metabolites
swd01120
Microbial metabolism in diverse environments
swd01230
Biosynthesis of amino acids
Module
swd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Swoo_0487
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Swoo_0487
Enzymes [BR:
swd01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Swoo_0487
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GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Pro_racemase
CntK_N
Motif
Other DBs
NCBI-ProteinID:
ACA84785
UniProt:
B1KQD0
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All DBs
Position
675694..676533
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AA seq
279 aa
AA seq
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MIHFAKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFH
YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVNMG
VPVLDPSKIPFNAKRVEKTYLLQTSSSHAMETFLCGAISMGNPHCVLEVEDIEHAEVERI
GALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQLQGKLN
KMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQIPQ
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
ttgattcatttcgctaagatgcatggcttaggcaatgattttatggtggttgatggtgtt
acgcagaatgtatttttttcgcctgaacagatcaaacgtctggctgatagaaattttggc
gtaggtttcgatcaactgcttttggtagagcctccctacgatcccgatctcgattttcac
tatcgtatctttaacgccgacggtggagaggttgagcagtgtggcaatggcgctcgctgt
tttgcccggtttgttcgaaataaaggactaaccaacaagcataagattaaggtgagcacc
tcaaacggtaagatcaccttacgattagagcgcgatggtaatgtgacggtcaatatgggc
gtgcctgtattggatccaagcaagatcccctttaatgcgaaacgagttgagaaaacttac
ctgcttcagaccagtagttcccacgcgatggagaccttcttgtgtggtgcaatatcgatg
ggaaatcctcattgtgtcttggaagtcgaggatatcgaacatgctgaagtcgagcgcatc
ggtgctcttttaacccaaaatgagcgttttcctaagggcgttaacgttggctttatgcag
gtcattgatgccgggcatatcaagctaagagtctatgagcgcggcgcggctgaaactctc
gcttgtggcactggagcttgcgctgctgcggctgttggccagttgcaggggaaattgaat
aaaatggttcgtgttgatcttcccggtggtacactgacgattaactgggaaggtgagggg
aatcctttgtggatgactgggcctgccgaacatgtatatgatggacagatacctcaatga
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