Shewanella woodyi: Swoo_0514
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Entry
Swoo_0514 CDS
T00676
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_0514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_0514
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Swoo_0514
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Swoo_0514
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACA84811
UniProt:
B1KQF6
LinkDB
All DBs
Position
727936..729261
Genome browser
AA seq
441 aa
AA seq
DB search
MSETHLSNQKFADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKT
LAFLVATFDHLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYG
GESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSM
DEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTEGKLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFA
CEEYALNLPAIEEYITHSIPVTNYDSEGLLDDIPAPIRVHRKHNNRPQQGRNNSGRPQGR
NGNRAGGRNGPRRHDQVRRHS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatcaaatcaaaagtttgccgacttttctctgaataaagagata
aaaacagcactaaacgagagcggttttgaattttgcacacctattcaagccctatcttta
cctattctattacagaaaaaagatattgctggccaagcccagaccggaacaggcaaaaca
ttagcctttcttgttgcgacatttgaccatcttctttctactcccgttcctgaaggacgc
caacttaatcagcctagagcgatgattatggcgccaacccgtgaattggctattcaaata
gctaaagatgcgacgcttcttgctaagcatacaggcctgaaggtcggtattgtctacggt
ggcgagagttatgatgttcagcgtaaggtgctggacaaaggtgttgatattcttatcggc
actacgggtcgtattattgattatgttcgtcaagggatcatcaatcttagtgctattcaa
gcggttgttctcgatgaagccgatcgcatgttcgatctcggttttattaaagatattcgt
tttcttttcagacgtatgccagatgctaaatcgcgtctgaatatgctgttttctgccact
ctttcaatgaaggtgcaggagctagcttatgatcatatgaatgagcctgagaaagtggtt
atcgcacctaatgaaaaaacctctaaaaatatcaaagaggagatcttctatccatcgatg
gatgagaagatgcgtctgctgctttctttgattgaggaagattggccagaaaaagcgatt
gtattttctaataccaaacacagctgtgaaaatgtttggtcatggttagaaggtgacggg
caccgagttggtttgttaactggcgatgtaccgcaaaagaagcgtattcgtattcttgag
cagttcaccgaaggtaagctagatatactggttgcaacagatgtagctgcgcgtggcctg
catatctctgatgtgtctcatgtgtataactatgatctgcccgatgactgtgaagattac
gtgcaccgtattggtcgtacaggtcgagcgggtaagaaaggggtatcagttagctttgca
tgtgaagagtatgcacttaacctccctgctatcgaagagtacattacccactctatccct
gtgactaactatgacagtgaaggattgctggatgatattcctgcaccaattcgtgtccat
agaaaacacaataatcgtccgcaacagggccgtaataactctggtcgtcctcagggacga
aatggcaatcgtgcaggtggccgaaatggtccacgtcgtcatgatcaagtacgtaggcac
tcttaa
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