Shewanella woodyi: Swoo_0636
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Entry
Swoo_0636 CDS
T00676
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_0636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_0636
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_0636
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Swoo_0636
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Swoo_0636
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
rRNA helicases
Swoo_0636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACA84932
UniProt:
B1KDD1
LinkDB
All DBs
Position
complement(880027..881844)
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AA seq
605 aa
AA seq
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MSSEEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAF
ALPLLNSIDPTTNAPQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQLN
SLRRGPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQE
RQLALFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMDVPSPETVTERRLSRLGEQVAEIISKDSLDFMKGAVAQLCQQLEVDTDI
LAAALLQQVQKERPLQLPSINERQRDNRDDRNSRDRGSRDRNDRPRRDSRPTPTNLGKAD
ALKDNPDVKMSRYIIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDNMTAIDLPDG
MPKDVLDHLKKVRVCGKPLNIREADGAEMPAGDSRPPRRPRKPSGDRRPSGDRKPHRKGP
SRDSE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgaagaaaaaactttccgcgaactcggtctttccgagcctttgttgcgtgct
cttgatgagctaggctacgaaaagcctaccccaattcaagctgcaagtatcgaccctctt
atggccaacaaggacatattaggtcaggcacagactggtacaggtaaaactggtgccttc
gctctgccactacttaacagcatcgacccaacaaccaatgcacctcaaattttagtgcta
gcgccaacacgtgaacttgctgttcaggttgcagaagcttttgctagctactctaaattt
atgaagggcatgcatgtactacctatttatggtggtcaaagcatgcagcagcagcttaac
tctcttagacgtggtccacagatcatcgttggtactcctggccgtgttatggaccatatg
cgtcgtggcacacttaagctcgctacgcttaaagctatggtacttgatgaagctgatgag
atgctaaaaatgggcttcatcgatgatatcgaatggatccttgagcatacacctcaagag
cgtcaactagcgcttttctcagcgacaatgcctgagcaaattaagcgtgttgctaacaag
tacttggataatccagtacacgttaaaattgcagcgacgacaacaacagttgaaaccatc
gagcaacgttttgttcaggtctctcagcacaacaaacttgaagcgttagtacgtgttctt
gaagttgaaaagactgaaggcatcatcatcttcgttcgtactcgtaacagctgtgttgag
ctagcagagaagcttgaagctcgcggttatgcatcatcaccactacacggtgatatgaac
cagcaggctcgtgagcgcgcagttgatcaacttaagcgtggcaagctagatatcattatc
gcaactgatgttgcggctcgtggtcttgacgttgagcgtatcggacacgtagttaactac
gatatcccttatgatactgaagcttatgttcaccgtattggtcgtacaggtcgtgctggt
cgtacaggtatggcaatcttatttgttacacacagagagatgcgtatgctacgcactatc
gaacgtgcaacaaagagccgtatctcaccaatggacgttcctagcccagagacagtgacc
gagcgtcgtctatctcgcctaggtgagcaagttgccgagatcatcagcaaagattcttta
gatttcatgaagggtgctgtagctcaactttgtcaacaacttgaagtcgacactgacatt
cttgcagcagcactgctacagcaagtacagaaagagcgtcctttacagttgccgtcgatt
aacgagcgtcagcgtgacaaccgtgatgaccgtaactctcgcgatcgtggttcacgtgac
cgtaatgatcgtcctcgtcgtgattcgcgccctactccaacgaacttgggtaaagccgat
gcacttaaggacaatccagacgttaagatgagccgttacatcatagatgtgggtcgtgat
catggtgttggtgtaggtaatatcgttggcgctgttgcaaacgaagcaaacatcgacagc
cgctatattggtcagattcagttatttgataacatgactgctatcgatcttcctgatggt
atgccaaaggatgtactggaccaccttaaaaaggttcgtgtttgtggtaagccactaaac
attcgtgaagctgatggtgctgagatgccagctggagacagccgtccaccacgtcgccca
cgtaagccttctggtgaccgtcgcccatcaggtgacagaaagccacaccgcaaaggccca
tcaagagatagcgagtaa
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