Shewanella woodyi: Swoo_0703
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Entry
Swoo_0703 CDS
T00676
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_0703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_0703
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Swoo_0703
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Swoo_0703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACA84998
UniProt:
B1KDJ7
LinkDB
All DBs
Position
complement(962335..963819)
Genome browser
AA seq
494 aa
AA seq
DB search
MSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKL
GKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQ
NLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQ
NEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIER
LIKQNIPRKEVEGFVPTQVLPDNDLNSQKHGQNRGPRNANGRGNGRNGNSQSRGSKQGRG
SGDTRSDSDKNRRPRRNSEGKTEHKDGQRSGEAARGHKPNDKNSSHGRSRKPSGQSSSSS
PASKPTSNSNIWGK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctggggttatcagccccaatattaaaagctgttgcccaaaaaggt
tacgatactccttcgccaattcaagcccaagccattccggctgtactcgaaggcaaagat
gtaatggccgcagctcaaacaggcacaggtaaaacagcaggatttacgctaccgctttta
gagctgttaagcagaggaaagcgtgctccagcaaagcaggttcgagcgttagtgttaact
cctacccgtgaactggcagctcaagttgcagaaagcgttgaaacgtacggtaaaaacctt
ccactgcgctccgccgttatttttggtggcgtaggcataggcccgcagatatctaagcta
ggtaaaggggtcgacatcttagtcgcaacaccgggtcgcttactggacttgtataatcaa
ggcgccgttagctttaaacagcttgaagtgctggtactcgatgaagccgaccgcatgtta
gacatgggctttattcatgacattaaaaaaattcttaagatattgccagccaagcgccag
aacttgatgttctcggccaccttctctgatgatatccgcaacttagctaaaggcttagtg
aacaacccagttgagatatctgttacgccgcgtaatgccacggctaaaaccgttgagcag
tatatctatcctgtagatcagaaacagaagactgccgcccttatccatctggttaaacag
aatgagtggaaacaagtactggtatttagtcgcactaaacatggcgctaaccgtattgct
aaaaaccttgaagctagcggcctcaccgcagcggcaatccacggtaataagagccaaggt
gcccgcacaaaagccttagcaaactttaagagtggcgaagttcgcgtattagttgctact
gatatcgcagctcgcggtatcgatatcgatcaactgccgaacgtcgttaacttcgaccta
cctaatgtacctgaggattacgttcatcgtatcggccgtacaggtcgtgctggcgcgaac
ggtcaagcagtgtctctagttagcggcgatgagagcaagctacttagggatatcgagcgc
ttaattaagcagaatattccccgtaaagaggttgagggctttgtgccgactcaggttttg
cctgacaatgatcttaatagccaaaagcatggtcaaaatcgcggtccgcgtaatgcaaat
ggcagaggcaatggccgtaatggcaatagccagtctcgcggaagtaaacagggacgtggt
agcggtgatacccgcagcgactctgacaagaatagacgcccacgtagaaacagtgaaggc
aaaacagagcataaagatggccaacgtagcggcgaagcggcacgcggtcataagccaaat
gataagaactcaagccatggccgctcacgtaaaccttctggccagagttcatctagctct
ccagcttctaagccaacatcaaatagtaatatttggggtaagtaa
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