Shewanella woodyi: Swoo_0892
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Entry
Swoo_0892 CDS
T00676
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_0892
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Swoo_0892
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
rRNA helicases
Swoo_0892
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
DUF6930
DUF2460
Motif
Other DBs
NCBI-ProteinID:
ACA85186
UniProt:
B1KF35
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All DBs
Position
complement(1189298..1190524)
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AA seq
408 aa
AA seq
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MLFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL
QHIIDFPRRFSGQARVVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEAL
KGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRKQ
TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADDKEHKFKLLCSIL
QQEETQRAIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVNVLL
ATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI
ERYMDQPLKRRFIKDLRPKNKEAKPPGKNKVKPSEKSFSKKNKKKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgaagacctcctgcttgaccctattttattagagtcattaaaagccatgggc
caccacaagcccaccaccatacagcaacaaacgatccccttggccatggatcagcgggac
attcttgcgcgtgcaccgactggaacaggcaaaacagccagcttcctactcccggctcta
cagcatattatcgatttcccgcgtcgattctcaggtcaggcacgtgttgtcattctcacg
cctacccgtgaactggcaagtcagatccacagatatgcctctcaccttgcctatgagcta
gaccttaatactgtcatcatcacaggtggtgtcccttatgcgcctcaagaggaagcatta
aaagggaatgttgatatattagtggcaaccccaggccgtctgatggagtacctagataag
ggactctttaatgctgaagaggtggagatcttagtgatcgatgaagccgacagaatgtta
gatatgggtttctcagccgttgtcgaaaccattgccattgagtctgttggccgtaaacag
actatgctgttttctgccacactagagggcagcgatgtcggccgcttctcccaccaactg
cttaccgatccggtaaaggttgaagccgaagcgcctcgcagtgagaaagcgaaaattcat
cagtggatccatattgccgatgataaagagcacaagtttaaactcttgtgtagcatactt
cagcaagaagagacccaaagagccattgtattcgttaaaacccgcgaagccgttgccagc
ttagaggggatgctgcagcgtgtaggcataccttgcagctatatgcgcggtgatatggag
caaaagcaaagattccaagcactgggtcgtttcactaaaggtgaagtgaatgtcttgctt
gccaccgatgttgccgcacgagggatcgatgttgaagatatcacccatgtgatcaacttc
gatatgccacgctctgccgatacctatgttcaccgtatcggtcgtacaggccgtgcaggt
gcaaagggaacggcaatctccctagtcgaagcacatgatatccgtgttgttggtaagatt
gaacgttatatggatcagccactaaaacgtcgcttcattaaagatcttagacctaagaac
aaagaggctaaaccaccagggaaaaacaaggttaagcctagtgagaaaagcttcagtaag
aagaataaaaagaagaaaaagaaataa
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