Shewanella woodyi: Swoo_0897
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Entry
Swoo_0897 CDS
T00676
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
swd
Shewanella woodyi
Pathway
swd03410
Base excision repair
swd03430
Mismatch repair
swd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Swoo_0897
03430 Mismatch repair
Swoo_0897
03440 Homologous recombination
Swoo_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_0897
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Swoo_0897
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Swoo_0897
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Swoo_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACA85191
UniProt:
B1KF40
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Position
1195380..1197104
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AA seq
574 aa
AA seq
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MIHKIVRRPRVDDTHLPETLSPLLKQIYASRGSTAADCDLALKRLLRPDTMMGLPRAAEI
IADAIMAQRSILIMGDFDADGATSTCVCLLALKMMGATRVDYLIPNRFDFGYGLSPEIVA
VAQDKGAELLITVDNGISSIEGVEAAKSLGMQVVITDHHLPGKTIPNADAIVNPNQVDCS
FASKSIAGVGVAFYLMSALRAELRSRNWYQEQGIAEPNLAQLLDIVALGTVADVVALDGN
NRILVEAGLQRVRAGRCRPGITALLEVAKRNPSRIVASDFGFAVGPRLNAAGRLDEMSLG
VETLLCDDMMTARRMASELDGLNAERRDLEADMQQEALKSLEKLELNEAELPWGIALFKE
DWHQGVIGILASRIKDRYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELINSRHPGMI
LKFGGHAMAAGLSLLEKDFYKFEQAYDEGVRELLKPEQLTGEMTTDGELTPDEMTLPMAW
ELRNAGPWGQEFPEPLFDGYFKVVQQRIVGEKHLKLVLETECGKLMLDGIAFNVDMTTWP
DATIEHARVVYKLDVNEFRGNQTLQLMVDQIEAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagattgttcgccgccctagagtcgatgatactcaccttcccgaaaccctc
tctccactcctaaagcagatatatgccagtcgtggcagcacggcggcagattgtgatttg
gccctaaagcggttacttcgccccgataccatgatgggattgcctcgtgcggcagagatc
attgcggatgccattatggctcagcgctctattctgatcatgggggattttgatgccgat
ggtgcaacttccacttgtgtgtgtttacttgcacttaagatgatgggggcgacgcgggtc
gactacctgatcccaaatcgatttgattttggttacggcttaagtcccgagatagtcgct
gtagcacaggataagggcgccgagttactgatcaccgtcgataatggcatctcctcaatt
gagggggtagaagcggcgaaatctctggggatgcaagtggttatcaccgaccatcacctt
cctgggaaaaccattcccaacgccgatgctatcgtcaacccaaaccaagtcgattgcagc
tttgctagtaaatcaattgcaggggttggggttgccttctatcttatgtccgcgttaaga
gcagagttaagatcgcgtaactggtatcaagagcaggggatcgctgagccaaatttagct
cagttactggatattgttgccttaggtacagtggctgatgtggttgcattagatggcaat
aaccgaatcttagtcgaagctgggttgcaacgggttcgcgcaggaaggtgtcgacctggg
atcacggcattgttagaggtggctaagcgtaatccatctagaatcgtggcttctgatttt
ggctttgcggttgggcctaggttaaatgcggcgggccgactcgatgagatgtcattgggg
gtcgaaaccctattatgtgatgacatgatgactgccagacgtatggcgtcagagctagat
ggcctgaacgctgagcgacgggatcttgaagctgatatgcagcaggaagctttaaagagt
ttagagaaattagagcttaatgaagctgagcttccttgggggatagccctgtttaaggag
gattggcaccaaggagtcataggaattttagcctcgcgcattaaggacaggtatcatcga
cctgttattgcgtttgccgatgcgggcaatggagagataaagggctctgcacgttcgatt
aaaggtctgcatatgcgggatctgttagagctgattaatagcagacaccctgggatgatc
cttaagtttggtggtcatgccatggcagctggcctctccctgttagagaaagacttttat
aagtttgaacaggcttatgatgaaggggtaagagagctgctaaagcctgagcagttaacc
ggtgagatgaccaccgatggcgagctgacacccgatgagatgaccttacctatggcttgg
gagctaaggaatgcaggcccatggggccaagagttccctgagcctctgtttgatggttat
tttaaagtggtgcagcagcgtatcgttggtgagaagcacctcaagcttgtactggaaacc
gagtgtggcaagcttatgcttgacggtatcgcctttaacgtcgatatgaccacttggccg
gatgccaccattgagcatgctcgtgttgtgtataagctcgatgttaacgagtttaggggt
aatcaaacattgcagttgatggtagatcaaatagaggcaatgtag
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