Shewanella woodyi: Swoo_1803
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Entry
Swoo_1803 CDS
T00676
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swd03032
]
Swoo_1803
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_1803
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Swoo_1803
DNA replication proteins [BR:
swd03032
]
Prokaryotic type
DNA Topoisomerases
Swoo_1803
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Swoo_1803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ACA86087
UniProt:
B1KNL0
LinkDB
All DBs
Position
2228583..2231303
Genome browser
AA seq
906 aa
AA seq
DB search
MEPIYKFLRLFGADHSMGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSTAE
ANVATKTPAEVRKMSPEEKAIYKSKRAKQALVTRMGVDPENGWKAKYQTLPGKEKVVKEL
QALAASADHIFLATDLDREGEAIAWHLQEVIGGDASRYQRVVFNEITKSAIQDAFSKPAT
LDTNMVNAQQARRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEKEGEIKAFVP
EEFWDIHANLTTLANDALKMEVVKFQEKAFNPVNELQAQTAVSALSQSSFVVAAREDRAT
SSKPSAPYITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEAVDNVR
EMIGKEYGDKYLPDAPIRYGSKEGAQEAHEAIRPSDVSVHAAGMKDMERDAQRLYELIWR
QFVSCQMTPAKYDATRLTVKAGEYELKATGRTLRFDGWTRVQTAVKKKNEEDNTLPVVAK
GDVLSLEELLPKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENR
RFYAEKMGEIVSESLIGSFKELMSYDFTASMEQTLDDVAQGELEWKKVLDGFYQDLTKQL
DQAELAPEEGGMRPNEMVLTDIKCPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMN
LTAGEEAVSENSEDAETDALRAKHRCGVCGTAMDSYLIDETRKLHVCGNNPICGGYEVEL
GQFKIKGYEGPIIECDRCSNDMELKNGRFGKYFGCTNSECKNTRKLLKSGEAAPPKEDPI
HLPELKCTKSDGYFVLRDGAAGIFMAASTFPKSRETRPPLVEELVKYRELLWPKYAYLAD
APVEDDDGNKSTVRFSRKTKEQYVATEVDGKATGWTSKFVDGKWVTESKKKAKPKAKPKA
KAKAKS
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatttacaaatttttgagactttttggcgcagatcattctatgggtaaatcg
ctagttattgtcgaatcaccggccaaagccaagactattaataaatatctcggcaaagat
tacatcgtgaaatcgagtgtgggtcatattcgtgacctaccaacatcctccactgctgaa
gcgaacgtggcgactaaaacgcctgctgaagtcaggaagatgtctcctgaagagaaagct
atatataagagtaaaagagcgaaacaggcgctagttactcgtatgggggttgatcctgaa
aatggctggaaggccaagtaccagactcttcccggtaaagagaaagtggttaaagagttg
caagcattagctgcaagtgctgaccatatctttctcgcaaccgatttggatagagaggga
gaggctattgcctggcatcttcaagaggtgattggtggagacgcatctcgttatcaacga
gtcgtgttcaacgagatcactaaatccgctatccaagatgcttttagtaaacctgccaca
cttgatacgaatatggtgaatgcgcaacaagcgcgccgtttccttgatcgtgtcgttggt
tttatggtttctcctctgctttggaaaaaagtggcgagaggactttcggctggtcgtgtt
cagtcggttgcgactcgtctagtggttgagaaagagggtgagattaaagcttttgttcct
gaggagttttgggatatacacgccaatttaacaacgcttgcaaatgacgcgttgaagatg
gaagtggttaagttccaggaaaaagcgtttaacccagttaatgagctgcaagctcaaacg
gctgtgagtgctttatcacagtcaagctttgtggttgcagctcgtgaagatagggcaacg
tctagtaaaccttcagcgccttatatcacatcgacattgcagcaggctgcaagtacccgt
ttaggttttggtgtaaagaaaaccatgatgatggctcaacgtctttatgaggcgggtcat
attacctatatgcgtacagattcaaccaacttgagtcaggaagcggtagacaatgtccgt
gaaatgattggcaaagagtacggcgataaatatctgcctgatgcgccaatccgttacgga
agcaaagagggagcgcaagaggcacacgaagctattcgtccttcagatgtatccgttcat
gccgctggtatgaaagatatggagcgtgacgcgcagcgactttatgagttgatctggcgt
cagtttgtttcttgccagatgacacctgctaaatatgatgcgactcgtttaactgtcaaa
gcgggtgaatatgagcttaaagcaacgggtcgaacactacgttttgatggttggacacga
gttcaaacagccgttaaaaagaaaaatgaagaggataataccctgccagtcgtggctaaa
ggtgatgtactctctttagaggagttactgcctaagcagcactttactaagccgcctgct
agatacagtgaggcttcattagttaaagagttagaaaagcgcggtattggccgtccatct
acctacgcaacgattatctcaaccatacaagaccgtggttatgtaaaagttgaaaatcgc
cgtttctatgctgaaaagatgggtgagattgtcagtgaaagtttgattggcagctttaaa
gagctgatgagctacgactttactgccagcatggagcagacccttgatgatgtggcacag
ggtgagctcgagtggaaaaaagtgcttgatggtttttatcaagacttgaccaaacagctt
gatcaagcagagcttgcaccggaagagggcggaatgcgcccgaatgagatggtgcttaca
gacatcaagtgtccgacttgtggcagacctatggggatccgaactggtaccacaggggtg
ttccttggttgttcaggttatgcgttgccgcctaaagagcgctgcaaaaccaccatgaac
ctaaccgcaggtgaagaagcggtcagtgaaaatagtgaagatgcagaaaccgatgcgtta
cgtgctaaacatcgctgtggcgtctgtggtacagccatggacagttatttaattgatgaa
actcgtaagcttcatgtatgtggtaataatccaatctgtggtggctatgaggttgagtta
ggtcaatttaagatcaagggctatgagggacccatcattgagtgcgatcgttgcagtaat
gatatggagttgaaaaatggtcgctttggtaagtactttggttgtactaactctgaatgt
aagaatactcgtaagctgctaaagagtggtgaagctgcgccgccaaaggaagatcctatt
catcttcctgagttaaaatgtactaagtcagatggctacttcgtattaagagatggtgct
gccggtatctttatggctgcaagtaccttccctaaatcacgtgagactcgtccgccatta
gttgaagaactagtgaagtaccgtgagctattatggcctaaatatgcttatttagccgat
gctccggttgaagatgatgatggtaacaagtctacggtgcgctttagtcgcaagaccaag
gagcagtacgttgcaacagaggttgatggaaaagcgactggctggacatcaaaatttgtt
gatggcaaatgggtgactgaatctaaaaagaaagccaagcctaaagcgaaacctaaagct
aaggcgaaagccaagagctaa
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