Shewanella woodyi: Swoo_2012
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Entry
Swoo_2012 CDS
T00676
Name
(GenBank) Pyridoxal-5'-phosphate-dependent protein beta subunit
KO
K06001
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
swd
Shewanella woodyi
Pathway
swd00260
Glycine, serine and threonine metabolism
swd00400
Phenylalanine, tyrosine and tryptophan biosynthesis
swd01100
Metabolic pathways
swd01110
Biosynthesis of secondary metabolites
swd01230
Biosynthesis of amino acids
Module
swd_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Swoo_2012
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
Swoo_2012
Enzymes [BR:
swd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
Swoo_2012
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PALP
Motif
Other DBs
NCBI-ProteinID:
ACA86296
UniProt:
B1KQQ7
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Position
2471726..2473048
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AA seq
440 aa
AA seq
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MDQLKDKLRSNNVNKLDYQLSLEDMPTQWFNFFPHLPKPLPPVRDNGKRSTLEISQLIRP
KILLEQNAPKENWIDIPEEVINKLIMCGRPTPLRRALSLEKHLKTPARIYFKREDTMATG
SFKLSTAVAQAYYAKQEGREILISETGAGQWGMSVALVSQMFGLDARIFMARCSLEQKPY
RQHYMKMLGCEVYPSPSTKTECGKELLLQTPGHPGSIGSAISEAIENALDTPGSAYLSGS
NVNHVHLHQTLLGLEVKQQLSMAGESNVDHLVACVSGGSNLCGFMMPFLPEKNSGAKIDM
LGVESTASPRLTQGTYEYCRSDVAGYTPEVLSHSMGESYIPAPVHVGGLRNHNSSPLVSL
LCREGILRAEALDEFNAFKAGQIMLKTEGILVAPESSHAVAAAIDLAEKARIENKESVIV
FLASGNGFLDLQGYNDVLNN
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggatcaattgaaggataagctcaggtcaaataatgtgaataaattagattaccaactc
tctttagaagatatgcccactcagtggtttaatttcttcccccacctacctaaaccatta
cctccagtaagggacaatgggaagcgttcaactctggagattagccagttaattcgccct
aaaatattacttgagcaaaacgcgccaaaagagaattggatagatattcccgaagaggtg
ataaataagttgatcatgtgtggtcgaccgacaccattgcgcagagcattgagtctagag
aaacaccttaagacgcctgcaagaatctactttaagcgggaagacaccatggcgacaggg
agttttaaactctccactgcagttgcacaagcatactatgcgaaacaagaaggtagagag
attcttatatcggaaaccggtgcaggacaatgggggatgagtgttgctttggtgagtcag
atgtttggccttgatgctcgaatatttatggctaggtgttcattagagcaaaaaccgtat
cggcaacattatatgaaaatgcttggatgtgaagtatatccttcaccgtcaactaaaaca
gagtgtggtaaagaacttctactccaaactccaggtcaccctggaagtattggtagcgcg
attagtgaggctattgagaatgctttagacacgccgggatctgcttatttatctggaagc
aatgtaaatcatgtgcacttacatcaaaccttgcttggtttagaggttaagcagcagcta
tcgatggctggtgaatctaatgtggatcatcttgtagcttgtgtcagtggcgggagtaat
ttatgcggctttatgatgccatttctgcctgagaagaacagtggagccaaaattgatatg
ttgggtgtggagtcaactgcctccccacgattaacccaaggaacctatgagtactgtcgc
tctgatgttgctggttatacgccagaagtgctgagtcactccatgggagagagttacata
cctgctccagttcatgtgggcggtttacgaaatcacaatagctcccccttagtcagtcta
ctctgtcgagaaggtattcttcgcgcggaggcattagatgaatttaatgcctttaaagcg
ggccaaataatgctgaaaacagagggaatattagtcgcgcctgagtcttcccatgcggtt
gctgctgccatcgatcttgcggaaaaagcacgcatagaaaacaaagaatctgtgattgtg
tttttagctagcggtaatggttttttggatctgcaaggttacaacgatgtattaaataat
tga
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