Shewanella woodyi: Swoo_2032
Help
Entry
Swoo_2032 CDS
T00676
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_2032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_2032
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_2032
Enzymes [BR:
swd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Swoo_2032
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Swoo_2032
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
rRNA processing factors
Swoo_2032
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACA86316
UniProt:
B1KRA9
LinkDB
All DBs
Position
complement(2497141..2500569)
Genome browser
AA seq
1142 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVVIQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELEVPQGMGLIVRTAGVGKDSAEL
KWDLKVLVHHWAAIKEAADSRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDA
KQHVSLVRPDFVDRIKQYEAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVSRHRKDDQISESSYKLLDKPEAKLYEPRKLERAAPPQPALKGFSAPKKSIEATPSV
AAKPAVKDSNEPGLISKFLSAIGALFKSEEKKEEPKKPQQSGRNNQNKNARRNTRRNDRR
PRDDKEQSGEKRERNPRNSRNKNADSNKENRASKDRDEQAKRQPRNSKSNRNQNSENDTT
AEQPKQEVARERRQRRNMRRKVRVENEQTETVVDSVTAPQEQAQPKANEEKQSRPKRQPR
KAKPKPQADDSVASQTAEQVEASDAVKSDTVQAEVQVVTDAKAVESKPVETSVESKQAVE
PSTAKSDDSSDTANSTENSAPQSAENVEATEGKEASDSRDGQRRSRRSPRHLRAAGQRRR
RDEETTETSSGAAPAFIPNEIEVENQANESKATEAANAEVSEPAVQADTQVVAETLDTAK
PEVSVKTEATAAPAKSEAPVKAEATSAPTKPETPVKAEATSAPTKPETPVKAAATSAPTK
PEAPVKAEATSAPTKSEAPVKAAATSAPTKPEAPVKAAATSAPTKPEAPVKAAATSAPTK
PEAPVKAAATSAPTKPEAPVKAEASTASATPARPETPVKVEVATTVETVASVEPVTLDTA
KVKPTSSSRFGTMVTSDMTKPVVEVRENIATPMGRQYDSNDNSQPVRAARTANTANSEMV
KP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcaactcaatctgaagagttgcgcgttgcccttgttgat
gggcaacaactgtatgatctagatattgaaagtcctggtcatgaacagaaaaaagcgaat
atttacaaaggtaaaattacccgagtagaaccttcacttgaagccgcgtttgtcgattac
ggcgcagagcgtcacggctttttacccctaaaagagatcgcaagagagtacttccctaaa
ggttattctttccaaggccgccccaatattaaagaggtggtaaaagagggccaagaggtt
gttattcaaattgataaggaagagcgtggtaataaaggtgctgcactgacaacctttatc
agtcttgctggttcttatctcgttcttatgcctaataaccctcgtgcaggcgggatctct
cgtcgtattgaaggtgatgagcgtacagagctaaaagcagcactgtctgaactagaagta
cctcaaggtatgggcttaattgttcgtactgctggtgtaggcaaagattctgctgagctt
aaatgggatcttaaggtgctagtccaccactgggctgcaattaaagaagctgctgatagt
cgtccagcccccttcttaattcaccaagagagcaatgttattgttcgtgctattcgtgac
tatttacgtcgtgatgtcggtgaagttctaatcgatcatccacgtatttttgaagatgct
aagcagcacgtatcacttgtacgccctgattttgttgatcgtatcaagcagtatgaagca
gaagttcctctgttcactcattaccagattgagactcaaattgaatcggctttccaacgt
gaagttcgtcttccatctggcggttcaattgttatcgatccaactgaagcactcacctca
atcgatatcaactctgcccgtgcaactaaaggcggtgatattgaagagacagctctcaat
actaaccttgaagccgctgatgagatagcccgtcaacttcgtcttcgtgatttaggtggc
ttggtggttatcgacttcatcgatatgacccctgtacgtcatcaacgtgaagtcgaaaac
agaatgcgtgacgccgttcaccacgacagagctcgcgttcaattaggccgtatctcacgc
tttggcttaatggagatgtcacgtcaacgtctacgcccttcccttgaagagtctgctgcg
cacctatgtccacgctgtcatggccaaggcactattcgtggcactgaatctttagcactt
tcaattctgcgtcttatggaagaggaagcgattaaggaaaacacatcacaaattgaagca
gttgtacctgttgatgttgccgccttcctgctaaacgaaaagcgtaaagcgatccgcata
actgagcagcgccacgatgtcgaagtgtatgtgatcccagatccaaacatgactacgcca
gattaccgcgtatcacgtcatcgtaaagatgatcagatcagtgaatctagctataagtta
ttagataagcctgaagctaagctttatgagccacgtaaacttgaacgtgcagcgccacct
cagcctgcattaaaaggtttctctgcgcctaagaagtcaattgaagcaacaccaagtgtt
gcagctaagccagctgttaaggatagcaacgagcctggacttatctccaaattcctctct
gctattggtgctcttttcaaatctgaagagaagaaagaggagcctaaaaagccacagcag
tctggacgcaacaatcaaaataagaatgcacgacgcaatactcgtcgcaatgaccgccgt
ccacgtgatgataaagagcagtcaggcgaaaagagagagcgtaaccctcgtaacagccgt
aataagaatgctgattcgaataaagagaatcgtgcaagcaaagacagagacgagcaagct
aaacgtcaacctcgcaatagcaagtctaatcgtaatcaaaacagcgaaaacgacacgact
gcagaacaacctaagcaagaggtggctagagagcgtcgtcaacgtcgtaatatgcgccgt
aaagtacgcgttgaaaacgagcaaacggaaacagttgttgattctgtgacagccccacaa
gagcaggcacagcctaaagccaatgaggagaagcagagccgtccaaagcgtcagcctaga
aaagctaagcctaaacctcaagcggatgattctgttgcttcacaaacagcagagcaggta
gaagcatctgatgcagttaaatcagatactgttcaagctgaagtccaagttgtaactgat
gctaaagcggtcgaaagcaagcctgttgaaaccagtgttgaatcaaaacaagcagttgag
ccaagtacagcaaagagtgatgactcaagcgatacagccaactcaactgaaaactctgca
cctcagtcagctgagaatgtagaggctacagagggcaaagaagcgtctgattctcgtgat
ggtcaacgtcgtagccgtcgtagcccacgtcatcttagagccgctggtcaacgccgccgc
agagatgaagagacaacagaaacttcatctggtgcagctcctgctttcattccaaatgaa
attgaagttgaaaaccaagccaatgagtctaaagctactgaagcggctaacgctgaagta
tctgagccagctgtccaagctgacactcaggtagttgcagaaactcttgatacggctaaa
cctgaagtgtcagtgaaaactgaagccaccgctgcgccagctaagtctgaagcgccagtg
aaagctgaagccacatctgcgccgactaagcctgaaacgccagtgaaagctgaagccaca
tctgcgccgactaagcctgaaacgccagtgaaagctgcagccacatctgcgccgactaag
cctgaagcgcctgtgaaagctgaagccacatctgcgccgactaagtctgaagcgccagta
aaagctgcagccacatctgcgccgactaagcctgaagcgccagtgaaagctgcagccaca
tctgcgccgactaagcctgaagcgccagtgaaagctgcagccacatctgcgccgactaag
cctgaagcgccagtgaaagctgcagccacatctgcgccgactaagcctgaagcaccggtg
aaagctgaagcctcgacagcatcagcaacgccagctagacctgagacgccagttaaggtt
gaagttgcaacaactgttgagactgttgcaagtgttgagcctgtaaccctagatacagct
aaggttaaacctacttcaagtagccgttttggtactatggtgacgtctgatatgactaag
cctgtagttgaagtgagagaaaatattgcgacgccaatgggtcgtcaatatgactcaaac
gataactcgcagccagtcagggcagcaagaactgcaaatacagcaaactcggaaatggta
aaaccataa
DBGET
integrated database retrieval system
