Shewanella woodyi: Swoo_2111
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Entry
Swoo_2111 CDS
T00676
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
swd03016
]
Swoo_2111
Enzymes [BR:
swd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Swoo_2111
Transfer RNA biogenesis [BR:
swd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Swoo_2111
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACA86395
UniProt:
B1KRI8
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All DBs
Position
2587163..2588272
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AA seq
369 aa
AA seq
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MLAFQYIDDDASLAKLVSQYRESQLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVA
VSDLSGFWSLLTEPSITTILHSCSEDLEVFARNGQCQPVKLFDSQIAAALCGFGHGLGYA
KLVEQTLNIPLDKGESRTDWMKRPLSEAQLNYAANDVYYLYQLYPQLVEKLEEQNRLGWV
FEEGERMTQGRLSPPDLELAYLRVKNAFQLSPKQLAYLKVLAKWRLSKALSRDLAVGFVV
KDHGLIGLAKKQPKNSSELYKMIELTEQEKRVHGKDLIRLLATADLDNLPDAIDVLALKT
GYKSSFKTIKQCLSELSERHEVPIELLGSKRHIHEYLEWLWAGKVGDKPLLLSGWRETLV
SAPLSALSL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgttagcgtttcaatatatagatgatgatgcaagtttagctaagcttgtttctcagtac
agagagagtcagttactggtattggacactgaatttgttcgtacccgcactttttatgct
cgccttggcttaatacaagcttatgatggtaaaaccctggccttgattgaccctgtggca
gtcagtgatctttcaggtttctggagcttgttgacagagcctagcatcactacgatttta
cactcatgcagtgaagatttagaggtctttgctcgcaacggtcagtgtcagccagtcaag
ctgttcgatagccagattgccgcagcattatgtggtttcggccatggcttgggctatgca
aagctggttgagcaaaccttgaacatcccacttgataaaggcgaatctcgtaccgactgg
atgaaacgtcccttaagtgaagcgcagctgaactatgcggctaacgatgtttactacctt
tatcagctctatccacaacttgtagagaagcttgaggagcaaaatagactgggttgggta
ttcgaagagggtgagcgtatgacccaaggtcgtctgtctccaccggatcttgagctggct
tatttaagggttaaaaacgcatttcaactgagtcctaaacagttagcatatttaaaagta
ttagcaaaatggcgcttatcaaaagccctgtcacgggatcttgctgtaggttttgttgtt
aaagatcacggcttaattggcttagcgaaaaagcagcctaaaaatagcagtgaactctat
aagatgattgagctgacagagcaggagaagcgtgttcatggcaaagatcttattaggtta
ttagccacggcggatctggataacctgcccgacgctatcgatgtattggcattgaaaaca
ggctataagagttcgtttaaaactattaagcagtgtttaagtgagctcagtgaacgccat
gaagtacctattgagctcttgggttctaagcggcatattcatgagtatcttgagtggttg
tgggcaggtaaggttggagataaacctctgctgttatctggctggcgtgaaaccttggtt
tcagcaccgctgtcggcactgtctctctaa
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