Shewanella woodyi: Swoo_2153
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Entry
Swoo_2153 CDS
T00676
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
swd01002
]
Swoo_2153
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
swd01011
]
Swoo_2153
Peptidases and inhibitors [BR:
swd01002
]
Cysteine peptidases
Family C82
Swoo_2153
Peptidoglycan biosynthesis and degradation proteins [BR:
swd01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Swoo_2153
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
ACA86437
UniProt:
B1KDP0
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All DBs
Position
2644581..2645966
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AA seq
461 aa
AA seq
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MHKGNRVGYVIMALFIQLCATPCVLALDKNSAAINALRYQVQLISLIDPSFSKYNQLLTQ
DLEEEQLDLTNDIQLEVANFWRSVKIQSRGEGGSDDLYRNVISLEPSSSDYLPISNRIRY
LLWVEQTESWQPLVLDIWLKEGDINPAVKVISRRLNWLGDLNFLDPDNSVMTSELVRGVL
NFQRRHGLKQDGVIGPETLRWINLTPKKRAALLAENFISKSSYLSTIGPRFLLVNIPAFE
MVLVDKGQVQLESRVIVGKPYRQTPRLSSYISNMVLNPSWRVPRTLLRRDLLPKVRKDGA
YISEHNFDVFNSAGDEIVKSPEEWQTLAGGRFPYRLVQKPGKDNTLGRYKFYFKNEYNVY
LHDTYDKALFEESNRALSSGCIRVEKVESLANWLASNLVSDKQTWVDLQTERDKTQWFAF
DNFLAVHLVYWTAWVDESGLAQFRNDIYHQNSMPKLASIQN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcataaagggaatagggttgggtatgtcattatggcactattcattcaactgtgtgct
actccctgtgtattggcgctagacaaaaattctgctgcaattaatgcacttagatatcaa
gttcagctcattagtttaattgacccatctttctctaaatataatcagttgcttactcag
gaccttgaagaggagcagcttgatcttaccaatgatattcaactcgaagttgccaacttc
tggcgctctgtcaaaatccagagccgtggggaggggggaagtgatgatctatatcgtaat
gtgatctccttggaacctagctcttctgactaccttcctattagcaaccgtattcgctat
ctgctttgggttgaacaaactgaaagctggcaaccattagtgctagatatttggctgaaa
gagggggatattaatccagctgtgaaggtgataagccgtagattaaactggctaggagat
ctcaactttttagatccagacaatagcgtaatgacgtcagagcttgttagaggggtcttg
aactttcaacgtcgtcacgggctaaagcaggatggggtgattgggcctgaaacactaaga
tggattaatttaacgcccaaaaaaagggccgctttactcgctgaaaattttatcagtaag
tcaagttatctctcgactattgggccaaggttcctgttagtgaatatcccggcttttgag
atggttttagtggataagggacaagtccaattagagtcaagagtgattgtggggaaacca
tatcgtcaaactcctaggttaagcagttatatctctaatatggtgcttaatcctagttgg
cgggtaccgagaacgttgctaaggcgggatctgttacctaaagtgcgcaaagatggagcc
tatatcagtgaacataactttgatgtctttaactctgcgggtgatgagattgtaaagtca
cctgaagagtggcaaacgttagcgggaggaaggtttccataccgcttagtacaaaagcct
ggaaaagataacactttagggcgttataagttttactttaaaaatgaatataatgtctac
cttcatgatacctatgacaaagcgctattcgaggagagtaacagagcgctctcttctggc
tgtattagggttgaaaaggttgagtcattagcaaattggttggcttctaatttggtgagt
gataaacaaacatgggtagatcttcaaactgaaagagacaaaacccagtggtttgcgttc
gataacttcctcgctgttcatctggtctattggaccgcatgggtagatgaatctggactt
gcacaatttcgtaatgatatttatcaccagaattcaatgcctaagcttgcctcaatacag
aattaa
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