Shewanella woodyi: Swoo_2554
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Entry
Swoo_2554 CDS
T00676
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
swd
Shewanella woodyi
Pathway
swd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Swoo_2554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_2554
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Swoo_2554
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Swoo_2554
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
Kinesin
AAA
AAA_22
Ish1
UB2H
DUF8810
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ACA86831
UniProt:
B1KGW2
LinkDB
All DBs
Position
complement(3122180..3124195)
Genome browser
AA seq
671 aa
AA seq
DB search
MAESSFQLESQYVPAGDQPKAIKKLVDGIESGLACQTLLGVTGSGKTFTIANVIKEMSRP
TIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHI
EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILHRLSEL
QYTRNDIELKRGTYRVRGEVIDIFAADSDSNAIRVELFDDEIERLSLFDPLTGHILQRIA
RTTVYPKSHYVTPREKILAASEEIKEELRERKKQLLDNNKLIEEQRITERVQYDIEMMVE
LGYCSGIENYSRYLSGREEGAGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKM
NLVEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPANYEIEKSDGEIAEQVIRPTGLL
DPELEVRPVAIQVDDLLSEVRKRVKVQERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNMNGKVILYADKITDSMAKAMGETERRRKLQHQFNLDNGLVPKGVSKKITDVMDV
GEKEYVQNDLASIRDIAESKGDYKVNDVASISHQIDTLEKKMHEHAKNLEFEQAAAVRDQ
VRRLHDELIKA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaatcatcttttcaacttgaatcacaatatgtacccgctggcgatcagcctaaa
gcgattaagaaactagtagatggcattgagtctggtttagcctgtcaaactctgttgggt
gtgaccgggtcgggtaaaacattcactattgctaatgtgataaaggagatgtctaggccc
acgattatcatggcgcctaataaaaccttggcggcacagctttatggggagatgaaggag
tttttcccccataacgcggtcgagtactttgtctcctactatgactattaccagcctgaa
gcgtacgttccttccacgaatacctttattgagaaagatgcatcggtcaatgcccatatt
gagcagatgcgtctgtcagcgactaaagctttgttagagagaaaagatgttgtgctgata
gcttcagtgtcagctatctatggtctaggcgacccagactcatatatgaagatgttattg
cacctaaggcagggcgatactatgggtcagagggatatattacatcggcttagtgagctg
caatatacccgtaatgatattgaactcaaacgaggcacttaccgtgttagaggggaagtg
attgatattttcgctgctgactcagatagcaatgcgatccgtgttgagctgtttgatgat
gagattgaaaggttaagcttatttgaccctttaactggtcatattttgcagcggatcgca
cgcacgactgtttaccctaagagccactacgtaaccccaagagagaaaatattagcggcc
agcgaagagattaaagaggagcttagggagcggaagaagcaactactcgataacaacaaa
ttgattgaggagcagcggatcaccgagcgggtacaatatgatattgagatgatggtagag
cttggttactgctctggcatcgaaaactactcaagatacctctctgggcgtgaagaggga
gctgggccgccaactctgcttgattatctacctgatgacggtttgcttatcattgatgag
tcccatgtgaccgtgccacaaattggggctatgtataaaggtgatcgctccagaaagatg
aacttggttgagtatggttttcgcttgccctctgcgttggacaatagaccccttaaattt
gaagagtttgaaagtctgatgccccaaactatctttgtctctgctacgccagcaaattat
gagatagagaagagtgatggtgagattgctgaacaggtgattaggccgactggtttgcta
gaccctgagcttgaagtccgtcccgtggcgattcaggttgatgatctattatctgaggtt
aggaagagagttaaggttcaagagcgtgtgttggtgacgaccttaactaagcgcatgtca
gaggatctcactgaatacttagatgagcatggggttaaagtaaggtatctacactcagat
atcgatactgtcgagcgagtggagatcatccgcgatctcagattaggtgtttttgatgta
cttgttggtattaacttgcttagagagggacttgatctgcctgaggtctcgttagtctgt
attcttgatgcggataaagagggttttttacgttcagagcgctcattaatacagaccata
ggtcgtgcggctcgtaatatgaatggtaaagttattctttacgccgataagatcacagat
tcgatggcaaaagcgatgggtgaaactgaacgtaggcgtaagttgcaacatcagttcaat
ctcgataatggtttagtaccaaaaggcgtttctaagaagatcaccgacgtgatggatgtg
ggtgagaaagagtatgtgcaaaatgatcttgcttcgataagagatattgccgaatccaaa
ggcgactacaaagtgaatgatgtggcgagcattagccatcagatcgatacgttagagaaa
aagatgcatgaacatgctaaaaacctggagtttgagcaagcagccgcagttcgagatcag
gtcaggcgtcttcatgatgagttgattaaagcgtaa
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