Shewanella woodyi: Swoo_2592
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Entry
Swoo_2592 CDS
T00676
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
swd
Shewanella woodyi
Pathway
swd00730
Thiamine metabolism
swd01100
Metabolic pathways
swd01240
Biosynthesis of cofactors
Module
swd_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Swoo_2592
Enzymes [BR:
swd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Swoo_2592
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ACA86869
UniProt:
B1KHI4
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Position
complement(3168640..3170598)
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AA seq
652 aa
AA seq
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MSNRRQTRAQAQQFIDTLTPLQHPNSEKVYLTGSREDLRVGMRQILQSDTLVGGTEADPI
LESNPPLKVYDCAGPYSDPDAEINVRAGLNKFRQSWIEERADTEQLAGVSSGFTQQRLAD
DGLDHLRFDSLLPPRRAQSGKRVTQLHYARNGIITPEMEYIAIRENMEQAGITDPVLRQK
AKGESFGASIEQVITPEFVRQEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSA
VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVN
GVAEDLSWEVFRDTLVEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCL
SHHSENFLYEHFTEICELCAAYDVSLSLGDGMRPGSIADANDEAQFSELETLGELVKIAW
EYDVQTIIEGPGHIPMNLIKENMDKQLALCDEAPFYTLGPQTTDIAPGYDHFTSGIGAAM
IAWYGCAMLCYVTPKEHLGLPNKEDVKQGLIAYKIAAHAGDVAKGHPTAQIRDNALSKAR
FEFRWEDQYNLGLDPETARAYHDESLPQESAKVAHFCSMCGPKFCSMKISQEVRDYAASQ
EVELQSHASYQAKSASEIETGMAQMSAEFKAKGAELYHETAVVDEELADAEA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcgtcgtcaaacccgagctcaagctcaacaatttattgatactttaacacca
cttcaacaccctaattcagagaaggtttatctgactgggagtcgcgaagacctgcgtgtt
ggtatgcgtcaaattttgcaatccgatactttagtcggcggcaccgaagccgatcccatt
cttgagtctaacccacctttaaaagtttatgattgtgcagggccatattcggatcctgat
gcagagataaatgtacgcgcaggcttgaataaatttagacaaagctggattgaggagcga
gctgacacagagcaacttgctggtgttagctcaggctttacccagcaacgtttagctgat
gatggcttggatcatctcaggtttgattcactgcttcctccacgcagagctcaatcaggc
aagcgtgtgactcaactccactatgcaaggaatggaattatcactcctgagatggagtac
atcgccatccgtgaaaatatggagcaggctgggatcaccgatccagttttaaggcaaaaa
gccaaaggagaaagctttggtgcctctatcgagcaagtgatcacccctgagtttgtgcgt
caagaagtggcccgcggtcgtgcaattattcctttgaacatcaatcatcctgaagctgag
cctatgatcattggccgtaacttcttggtaaaggtgaatgccaatatcggaaactctgcc
gtgacttcatccattgaggaggaggttgagaaactggtttggtcaacccgctggggcgca
gataccgtgatggatctctccactggccgctacattcatgaaacccgtgagtggataata
cgtaactctccagtgccgataggaaccgtacccatctatcaagcattagagaaggtcaat
ggtgttgctgaagatcttagctgggaggtgtttagagataccttggttgagcaggcagag
caaggcgttgattactttacgattcacgcaggggttctacttcgctatgtacccatgacg
gcaaaacgggtgacaggtattgtgtctcgtggtggctcgatcatggctaagtggtgtttg
tctcatcatagtgaaaacttcctttatgaacacttcacagagatctgtgaactgtgcgcc
gcctacgatgtctcgctttcattgggtgatggcatgcgtccaggctctatcgcagatgcc
aacgatgaggctcagtttagtgagttagagaccttaggagagctggttaaaatagcgtgg
gagtatgatgttcaaaccattatcgaaggccctggccatatcccgatgaacttaatcaag
gagaacatggataagcagctagcactctgtgatgaggcgccgttttacactttagggcca
caaaccaccgatatcgcgcctggctatgatcattttacatcggggatcggtgcggcaatg
atcgcatggtacggctgcgccatgctctgttatgttacccccaaagaacaccttggtctg
cccaataaagaagatgttaagcaagggcttatcgcatacaaaattgccgctcatgctggt
gatgtggctaaagggcatccaacggcacagatccgtgacaacgcgctctctaaggcaagg
tttgagttccgctgggaagatcaatataacttaggactcgaccctgagacagctcgcgct
tatcacgatgagtctctgcctcaagagtcggcaaaagtggctcacttctgctccatgtgt
gggcctaaattctgctctatgaagattagccaagaggtacgtgattacgccgcatctcaa
gaggttgagctgcaatctcatgccagttatcaggctaaaagtgcctcagaaatagaaact
ggaatggcgcaaatgtctgcagagttcaaggctaaaggcgcagagctttaccatgaaacg
gctgtcgttgatgaagaactcgcggacgcagaggcttaa
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