Shewanella woodyi: Swoo_2612
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Entry
Swoo_2612 CDS
T00676
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
swd01011
]
Swoo_2612
Enzymes [BR:
swd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Swoo_2612
Peptidoglycan biosynthesis and degradation proteins [BR:
swd01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Swoo_2612
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
Sda
Motif
Other DBs
NCBI-ProteinID:
ACA86889
UniProt:
B1KHK4
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All DBs
Position
3193723..3195276
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AA seq
517 aa
AA seq
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MRIQVFVIAGGIALLSGCQSFNQTTRDTTEQAQPLVQQAALLPPAIEKAPIEEAIEISDV
WQRIRLGLSLPVPDQKLVNQYRDWYIKHPQHLERVSQRAEPFLYLIVEEIEKRDLPIELA
LLPIVESAFDPFAYSHGAASGLWQFTAPMAKHFGLEMNWWYDGRRDVPAATIAALDMLEY
LYKKTHGNWLYATAAYNTGEGRVLNAVKRNKRQGKATDFWSLDLPRETERYVPQMLALAE
VIKNADKYGIKLMPIKNQPQIQVVDIGGQIDLALAAGMAGMTTSELHKLNPGYNQWATAP
DGPHKLVLPVDKAKEFNLALAETNPDERLNWERYQIKSGDSLGVIAKRYHTTVPALRAVN
DIKGNTIVIGKHLLIPVAAKSPEQYAYSANQRLLAKQKGKSGNKVSYTVQAGDSFWKIAK
AHKVSVSQLTSWNNMAPKDGLRIGKKLTIWTGGKQKTSSITRTVNYTVRNGDSLARIATK
FKVSVNDLVRWNALEKSKYIQPGQKLKLFVDMSKVRA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatacaagtatttgtaatagcggggggaattgccctgctatctggttgtcagtct
ttcaatcaaacgacaagagacaccacagaacaagctcagccactggttcaacaagctgca
ttattgcccccagctatcgaaaaagcaccgattgaggaggccatcgagatcagcgatgtt
tggcaacggatacgtttaggactaagccttcctgttcccgatcaaaagctggttaatcaa
tatcgcgattggtatatcaaacacccacagcacctagagcgggtatcacaaagagccgag
ccctttctttatctcattgttgaagagatagagaaacgggatctacccattgagttagcc
ttacttccaattgtcgagagcgcctttgacccctttgcatactcccatggtgcagcttcg
ggtttatggcaatttaccgcccctatggccaaacatttcggactagagatgaactggtgg
tatgacggacgccgtgatgtgcccgctgccaccattgcagctttggatatgctcgaatac
ctctataaaaaaacacacggtaattggctctacgcaaccgctgcctataacacaggagag
ggccgcgttctcaatgccgtcaagcgcaataaaagacagggtaaagccactgacttctgg
tctttggacctgccaagagagacggagcgttatgtacctcaaatgttggctttggcagag
gtcataaaaaatgcagataaatatggcattaaacttatgccaattaaaaaccaacctcag
atccaagttgtggatattggtggtcagatagatctcgcattagctgcagggatggccggt
atgaccacctctgaactgcataagcttaaccctggctataatcaatgggcaacagcccct
gatggaccacataagcttgtgcttccagtcgataaagcaaaagagtttaaccttgcattg
gctgaaacaaatccagatgagcgattaaactgggaaaggtatcaaataaaatccggtgac
agtttaggcgtgatagcgaaaagataccacactacagtcccagctctacgagcggttaat
gatataaagggcaatactattgttataggtaagcatctgctgatccctgtagccgctaaa
tcacctgagcagtacgcttattcggcaaaccaaaggttactggctaagcaaaaaggaaaa
tctggcaataaagttagctataccgtccaagcaggtgattcattttggaaaatagccaag
gcacataaagtgtcagtatctcagctgacaagctggaacaatatggctccaaaagatgga
ttgagaattggtaaaaaactgactatctggactggtggaaaacagaaaacctcctcaatc
acccgcactgttaactacacagtaagaaacggtgattccttagctcgtattgcgactaag
tttaaggtgagtgtgaacgatcttgttcgttggaatgcactagaaaaaagcaaatatatc
cagccaggtcagaaactcaaactctttgtcgatatgagtaaagttcgagcctaa
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