Shewanella woodyi: Swoo_2683
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Entry
Swoo_2683 CDS
T00676
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_2683
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Swoo_2683
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Swoo_2683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
ResIII
SLFN-g3_helicase
TsaE
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ACA86959
UniProt:
B1KIA8
LinkDB
All DBs
Position
complement(3282077..3285952)
Genome browser
AA seq
1291 aa
AA seq
DB search
MSSQQHPLSNAYLNLCYQADASRIKRRLYRLNKEVDSDKKRANLEKLESQAVEAFEKVEK
RRQARPEISYPEGLPISQKREEIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGCRG
LIGHTQPRRLAARSVATRVADELNSPLGEAVGFKVRFADAINNDSYIKLMTDGILLAELS
NDKFLDQYDTIIIDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDLDKFSQHFGD
APIIEVSGRTYPVETRFRPLVRDSDEDLDLTEGIFEAVDELTKEGPGDILIFMNGEREIR
DVADQLNRRQYRDTEILPLYARLSYGEQSKVFKSHVGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYGEDDFINRPEFT
DPEILRTNLASVILKMLSIGLGDIGSFPFIQPPDQRYIQDGTLLLEELEAVTKSKGRLAL
TGLGRQLATIPVDPRLARMVIQANQNGCLHEALVITSALSIQDPRERPMDKKQASDEAHK
KHSDKDSDFVSYVNLWDHIKSLQKQHSSSQFRKQCKKEFLAYLRVREWQDLYTQLKQAVH
DLKWRLNSEPADYELLHKSLLTGLLSHVGFKDKDNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIQPEWIEPLAGHLIKKNYLEPHFEAKQGSVVALENQLLYGL
MIVNRRKTQYGPVNPVEAREIFIRSALAEGELRTNESFFIKNRNLLQEVEALEHKSRRRD
ILVDEQALVDFYEPKIPEGIYNAPKFFSWWKRERKQNPDLLDFEREQLMQRGDSHISALD
FPDFWHQGNLKLSVSYHFEPSADDDGVAIHVPVALLNQIEDVDFDWQVPGLREEKCIALI
KSLPKSIRRNFVPAPDYAKACLQAMKPFEMSLVEAMCKQLLRMSGTRVNPEDFDQSQLTK
HLLMNFKVEGDKGKLVAQGRDIEVLKASLQGQVSQAIRKVADSGIEKSELTQWSFGNLPS
QFQQKKGNFEVKAFPALVDDKESVSIKLFDDENEALRSHRNGLQRLLLINMPSPVKHLQK
TLPNKAKLAMYFNPFGQVQILIDDILAAAVQQLLDEKALNVRNEADFEVAKEWVRQELNP
TAAKLALKVEEILTLYQKIKKRLKGKISLDIAFAMSDIQTQLDKLVYKGFVEGCGWRRLA
DMARYLKAVDNRLDKLPIDPNRDRLHMHSINNVQNALEEQLGKVPRSAAIPEALLDARWM
IEEYRVSCFAQVLGTAYPISEKRILNRIKES
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcgcaacaacatcctctatcaaacgcttaccttaatctttgctatcaagcagat
gcctccagaattaagcgtcgtctctataggctaaataaagaggtcgattctgataagaag
cgtgcaaatcttgaaaagcttgagtcacaagccgttgaagcatttgagaaggtagagaag
cgccgtcaagctcgccctgagatcagttatcctgaaggtctgccaatttcgcaaaaacgc
gaagagatagcccgcgccattgcgggtaatcaggtggtgatcatcgctggggaaacggga
tcgggtaaaaccactcagttaccaaaaatctgtctcgaactaggtttaggctgccgtggc
cttattggtcatactcagcctcgacgactcgcagcaagaagtgttgccacccgtgttgct
gatgaacttaatagccctttaggtgaagccgttggttttaaagtaagatttgctgacgcc
attaataatgattcctacatcaagttaatgactgacggtattttgttggctgagctgtca
aatgataagtttctagatcaatacgacaccatcattatcgatgaagcccacgaacgaagt
ctaaatatcgactttattttaggttatcttaaaagtgtcctgaagcgtcgtcccgatctt
aaggtgattatcacctcagcgacaatcgatcttgataagttttcacagcattttggtgat
gcacctattatcgaggtgtccggtcgaacctatccggttgagactcgttttcgcccctta
gtgcgcgatagcgatgaagatcttgacctcaccgaggggatttttgaagcggttgatgag
ctgactaaagagggtcctggggacattcttatttttatgaacggtgagcgagagatccgc
gacgttgccgaccagcttaatcgacgtcaataccgtgacactgaaattttacctctctat
gcgcgcctctcctatggagaacagtcaaaggtgtttaagagccacgttggccgccgaata
gtgttagccaccaatgtcgcagaaacgtcgttaactgtccctgggatacgttatgttatc
gatccaggtacagcgcgtatcagtcgatatagttatcgaactaaggtgcaacgtctgccg
attgagcctatctctcaagctagtgcgaatcaaagacagggtcgatgtggccgtgttgcg
cccgggatctgtatacgtctctatggggaagatgattttattaatcgccctgaatttacc
gatcctgagattttacgtactaatttagcgtcagttatcttgaagatgctatcgattggt
ttaggtgatattggctctttcccttttattcagccaccagatcagcgctatattcaagat
ggcactctcctgcttgaggagcttgaggctgtgactaagagtaaaggacgtttggcgtta
accggcttgggacgccaattggccacgatcccagtggatcctcgcttagcacgtatggtt
attcaggcaaatcaaaatggctgtttgcatgaagcactcgtcattacctcggccctttct
atccaagatccccgtgagcgcccaatggataagaagcaagccagcgatgaagctcacaag
aagcacagtgataaagattcagattttgtctcctatgtgaatctgtgggatcacatcaag
tcactgcagaaacagcactcatccagtcagtttagaaaacagtgtaagaaggagtttctt
gcctacttgagagtgcgagagtggcaagacctttatactcagttaaagcaggctgtgcat
gatctaaaatggcgtcttaacagtgagcctgccgattatgaactgctgcataaatcactg
ctgacagggcttttaagtcatgttggttttaaagataaagacaatgagtatttaggtgct
cgtaatcgaaagttctttgtgtttccaggttcccctttggccaagaaagggcctaagtgg
attatggcggcggagcttactgagacatcccgtctgtttgcccgttgctgcgccaaaatt
cagcctgagtggattgagcctttagcgggccatttgatcaagaaaaactacctagaacct
cactttgaagcaaagcagggcagtgtcgttgcgttagaaaatcaattgctatatggcttg
atgatagtcaacagacgtaaaacccaatatggccccgttaaccctgttgaagcgcgcgag
atatttattcgcagtgcccttgcagaaggggagttgcggacaaatgagtcgttctttatt
aaaaatcgcaacttattgcaggaagttgaagcattagagcataagtctcgtcgccgtgac
atcttagtcgatgagcaggcgttggtggacttctatgagcctaaaatacctgaaggtatc
tacaacgcgcctaagttctttagctggtggaagcgtgagcgtaaacagaatccagatctg
ctggattttgaacgtgaacagttgatgcagcgcggagattcacatatctcagctttggat
ttccccgatttttggcatcaagggaacctaaagctatcggtcagctaccattttgaaccc
tctgctgacgatgatggtgttgccatccatgtgcctgtagccctattaaatcagatagag
gatgtggattttgactggcaggtaccaggtcttagggaggagaaatgcattgcacttatc
aaatccttgcctaaatctatcagacgtaactttgtccctgcgcccgattacgccaaagct
tgtttacaagcgatgaagccgtttgagatgagtttagttgaagccatgtgtaaacagctt
ctgcgcatgagtggaactcgggttaatccagaggatttcgatcagagccagcttactaaa
catcttctgatgaactttaaagtagaaggtgacaaggggaagttagttgctcaaggccgt
gacattgaggtgttaaaagcaagtttacaggggcaagtttcccaagctatccgtaaagtg
gctgattctggtatcgaaaaatctgaattaacccagtggtccttcggtaacctgccaagc
cagttccaacaaaagaaaggtaacttcgaggttaaggcatttcctgcgttggttgacgat
aaagagagtgtttcgatcaaattatttgatgatgaaaatgaagcgcttcgctcccatcgt
aatggcttgcaacgtctgctgctgatcaatatgccatcaccggttaagcaccttcaaaag
actttgcctaacaaggctaaacttgcgatgtactttaatccatttggtcaggtgcagatc
ttaattgatgacatacttgctgctgcggttcagcaactgttggatgaaaaggcattgaat
gtgcgcaatgaagctgactttgaagtcgccaaagagtgggttaggcaggagcttaatcca
actgctgcaaaattagcactcaaggttgaagagattttaaccctgtatcagaagataaag
aagcgactcaagggcaagataagtttagatatcgcctttgccatgagtgatattcagacc
caattggataagctggtttataagggctttgttgaaggttgtggttggcgaaggctggct
gatatggcccgttacctaaaagcggtggacaaccgtttggataaattgcctatcgatcca
aaccgagatcgtttgcatatgcatagcatcaataatgttcaaaatgcacttgaggagcaa
ctgggcaaggtaccacgttcagctgcaatacctgaagccctgctagatgcgagatggatg
atagaggagtatcgagtctcctgttttgcccaagtgttaggcactgcataccctatctca
gaaaaacggatattgaaccgtattaaagagagttaa
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