Shewanella woodyi: Swoo_3266
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Entry
Swoo_3266 CDS
T00676
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03030
DNA replication
swd03430
Mismatch repair
swd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Swoo_3266
03430 Mismatch repair
Swoo_3266
03440 Homologous recombination
Swoo_3266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swd03032
]
Swoo_3266
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_3266
Enzymes [BR:
swd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Swoo_3266
DNA replication proteins [BR:
swd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Swoo_3266
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Swoo_3266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
SPOUT_MTase
Motif
Other DBs
NCBI-ProteinID:
ACA87536
UniProt:
B1KNS8
LinkDB
All DBs
Position
complement(4005922..4009395)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHGA
GIKPLIGSDFWVKVPGFDKNLCAVTVLAMNNEGYKNLTLLISDAYLRGHIDDRAVIDHEW
LAKYSEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYLELLRTGRPDEER
YLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADPRRPKKYSAEQYF
KSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYFLPNFPTGELTIEDFLVAVSEKGL
EERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDAEGQNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEERVRIESIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREA
VSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLKFNVDDEGNIVYGIGAIKG
VGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDTLGPHRAAMMAT
LPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFAGGNRMTARNIIDMGEARSHFAS
AVEVDIESHAISTDWLDQFQGAIEPWKNGAVPIMVNYSQPQAKAQFKLGDSWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcccagttttgtccatttacgtgtccacagtgatttctctatgtcagatgga
ttggcaaaagttaagccaattatcggtaaagtatcagaacttggcatgccagccgttgca
ctgacagatcaaactaacctgtgtggtttggtaaagttctatgaagcgtgtcacggggct
gggattaaaccacttattggttcggacttttgggtcaaggtcccaggttttgataagaat
ctttgcgctgttactgtgttagcgatgaataatgagggttataagaatttaaccttgttg
atcagtgatgcctatcttaggggacatattgatgacagagcggttatcgatcatgagtgg
ctagcaaagtattctgaggggataattcttctatctggtggccgccaaggagatataggt
caggctctattaaaaggcaatttgcctcaggttgaatcattggtcgagttttatcagacc
cacttccccgatagatattatcttgagttactgcgtacaggacgtccagatgaggagcgt
tacctgcatatggcagttgagcttgcagaggtcaaaggcctgcctgtcgttgccactaac
caagttgtattcaatacccctgaactgtttgaagcccatgagatccgcgtagctatctct
gatggttttaccttagccgatccccgccgccctaaaaaatacagtgcggagcagtatttt
aaaagcagcgagcagatgtgtgagctgtttgaagacattccagaagcgattgaaaacacc
gttcagatagctaaacgctgtaacgtgacagtaagattaggcgagtatttcctgcctaac
tttcccacaggtgagcttaccattgaggacttcttagttgcggtttctgaaaagggactt
gaagagcgtcttgagtttctttttcctgatcctgaagtaagagctgaaaaacgccctaaa
tatgatgagcgtcttgatgtcgaacttaaagtaattaaccagatgggattccctggttac
ttcttgatcgtaatggagtttattcagtggggtaaggataatgatatccctatcggtccc
ggtcgaggctctggtgcgggctcgttagtggcttatgcccttaaaattaccgatcttgat
ccactggagtatgagcttcttttcgaacgattccttaaccctgagcgtgtctctatgccg
gatttcgatatcgatttctgtatggatagacgagacgaggtgatcgatcacgttgctgag
ctttatggtcgcgacgcggtgtcgcaaattatcaccttcggtaccatggctgcaaaagcg
gttattcgagatgtaggacgcgtgctcggtcacccctatggtttcgttgatcggatctct
aaaatggtgccagcagaacctggcatgaccttagccaaagcgtttgaggttgagcctgca
ctgcaggagtcttatgacgctgatgaagaggtgaaagaccttattgatatgtgtcgcatc
cttgaaggtgtgacacgtaacgcaggtaagcacgcgggtggtgtggttatctcgccgacg
acaatcactgactttgcgccaatctattgtgatgcagagggacaaaacccggttactcag
tttgataagaacgacgtagaaaccgcaggcttggttaagtttgacttcttaggtctgcga
accctgactattgtcgactgggccttgcagatggtcaatgccaagaaagataaacttggg
gaggagcgagttcgaatcgagtcgattccccttgacgacccagcaagctttagactgtta
caacgatatgaaactacggcagtatttcagctggaatcccgagggatgaaagatctgatt
aaacgcctacaaccagattgctttgaagatatgatcgcactggtagcgctatttaggcca
ggtccactgcaatcgggcatggtagataactttatcgagcgtaagcatggtcgtgaggcg
gtttcatatccagattctgagtaccaacacgagtctcttcagtgggtgctcgagccaacc
tacggcattattctctatcaagagcaggtgatgcagattgcacaggttcttgctggctac
accttgggcggcgcggatatgctccgtcgtgctatgggtaagaaaaaacccgaagagatg
gcgaaacagcgcggtactttcgaagagggctctatcaataatggtgtcgatggcccattg
tcgatgaaaattttcgatctggtagagaagtttgcaggttacggttttaacaagtcacac
tcggctgcatacgctctggtgtcctatcaaacactttggttaaagacccattatcctgct
gagtttatggctgcggtaatgtcggcagatatggataacactgacaagattgttatttta
gtcgatgagtgtgagcgaatggagatgccgcttcttccgccggatgtgaataagggttta
cttaagtttaacgtcgatgatgaaggcaatatcgtttacggtatcggcgcgattaaagga
gtgggcgaggggccggttgattcaattcttgctgctcgaaaagatggcccctttaaagac
ttgttcgacttttgtgctcgtgtcgatctgaaaaaactcaataagcgcattatggagaag
ctcatctgtgctggcgcattagataccttaggtcctcatcgtgcagcgatgatggccact
ttgccagaagcgatacgtgctgcggatcaaaatgccaaagcggaagcgataggccaacac
gatatgtttggtctgttaaattcagatccagaggatataaaacagcagttcgtagagtgc
acgccttggcctgataaagtttggctggagggggagagagagacgttaggtttatacctg
acgggtcacccgatcaatcagtatctcaaagagttaaagcactacacctcatgccgtctt
aaagatatacatccgacagagcgtggtaaaaccatgaaggcggcgggtcttgttgtcgcg
acccgcgttatgatgaccaagcgcggctcaaagatgggactggtaaccttagacgataag
agtgcgcgccttgaggtgatgttatttaccgaagcgtttgaaaaattcaatcatcttttg
gagaaagataggatcctcattatcgaaggcgaagtcagtttcgatgattttgctggcggc
aaccgcatgaccgctagaaacattatcgatatgggggaagcacgtagccactttgccagt
gccgttgaggttgatatcgagagtcatgctatatccaccgattggctcgatcagtttcag
ggggcgattgaaccttggaaaaacggtgcggtacctatcatggtcaactatagccaacct
caggctaaagcccagtttaagctaggggatagctggcgagttaatccaacggatgagctg
atgttagcgttggaaacattaactggtgcgggtaaagtcaggatcttattttaa
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