Shewanella woodyi: Swoo_3342
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Entry
Swoo_3342 CDS
T00676
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swd03021
]
Swoo_3342
Transcription machinery [BR:
swd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Swoo_3342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_IclR
Put_DNA-bind_N
Motif
Other DBs
NCBI-ProteinID:
ACA87611
UniProt:
B1KPS8
LinkDB
All DBs
Position
complement(4097666..4098634)
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AA seq
322 aa
AA seq
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MGRKANTAVAEPLVDLAKNESDIESTTAKTEGAELENQVQDDLQKNLDATQLYLSEIGFS
PLLSAEEEVYFSRKALKGCDKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLI
RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHK
LDHEPTAEEIAEKLDLPSADVSRMLKLNERITSVDTPLGGDNDKALLDVLADDDNVGPDY
KVQDEDMSKSVVKWLDELNTKQREVLARRFGLLGYEPSTLENVGKEIGLTRERVRQIQVE
ALKRLKDLLSAQGLSVEAIFKI
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtaaagcaaataccgcagtagcggagccgttagtggacttagctaagaatgag
tccgatatcgaatcaacaacagcgaaaacagaaggcgccgaacttgaaaatcaggttcag
gatgatttacaaaaaaacctagatgcaactcagctctatctgagtgaaattggtttttcc
cccctactcagtgcggaggaggaggtgtatttttcacgtaaagctctaaaaggctgtgat
aaatcccgaaaccgcatgatcgaaagtaatctaagacttgtcgttaaaattgcccgtcgt
tataacaatcgtggtcttgctctgcttgatttgattgaggagggaaacttaggtcttatt
agagccgttgagaaatttgatcctgaaagaggattcagattttctacttatgcgacttgg
tggatacgccagaccatagaacgtgccatcatgaatcaaactcgtaccattcgacttcct
atacatgtagtgaaagagttgaatgtgtatcttcgtacggccagagagttagcacataaa
ctagatcacgagcccacagctgaagagatcgctgaaaagctagatcttcctagtgcagat
gttagtcgcatgctgaagcttaatgagaggatcacctctgttgacacacctcttggaggt
gataacgacaaggcacttctcgatgtgttagctgatgatgataatgtcggtcctgattat
aaggttcaggacgaagatatgtctaagtcagtggttaaatggttagatgaactcaacaca
aaacagagagaggtgttagcgcgccgttttggtttgttgggctatgagccttctacattg
gaaaatgtaggaaaagagattggattaaccagagagcgagtacgtcaaattcaagtagaa
gctttgaaaagactcaaagatctgcttagtgctcaaggcttatctgtagaggctattttt
aaaatttaa
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